Variant report

Variant	rs17129251
Chromosome Location	chr1:84228589-84228590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10489501	1.00[EUR][1000 genomes]
rs11163824	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11163831	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077325	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84224800-84230600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:84225000-84230400	Enhancers	Primary B cells from cord blood	blood
3	chr1:84226800-84230000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:84226800-84230400	Enhancers	Fetal Lung	lung
5	chr1:84227200-84230200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:84227800-84229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:84227800-84230000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:84227800-84230000	Enhancers	Fetal Intestine Small	intestine
9	chr1:84227800-84230200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:84227800-84234600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:84228000-84229000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:84228000-84229000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:84228000-84229200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:84228000-84229200	Enhancers	Adipose Nuclei	Adipose
15	chr1:84228000-84229200	Enhancers	Liver	Liver
16	chr1:84228000-84229600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:84228000-84230200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:84228200-84229200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:84228400-84229000	Weak transcription	Fetal Kidney	kidney
20	chr1:84228400-84230000	Weak transcription	Brain Germinal Matrix	brain
21	chr1:84228400-84235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links