Variant report

Variant	rs12077325
Chromosome Location	chr1:84230840-84230841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10489501	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163824	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11163831	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17129251	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36017423	0.80[AFR][1000 genomes]
rs997869	0.80[AFR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84227800-84234600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:84228400-84235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:84229200-84231000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:84229600-84231200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:84229600-84231400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:84230000-84231000	Enhancers	Liver	Liver
7	chr1:84230000-84231200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr1:84230000-84232000	Weak transcription	Fetal Intestine Small	intestine
9	chr1:84230000-84232200	Enhancers	HepG2	liver
10	chr1:84230400-84231800	Weak transcription	Primary B cells from cord blood	blood
11	chr1:84230400-84232000	Weak transcription	Fetal Lung	lung
12	chr1:84230400-84233600	Weak transcription	Fetal Kidney	kidney
13	chr1:84230400-84234800	Weak transcription	Fetal Brain Male	brain
14	chr1:84230400-84235000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:84230600-84231200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:84230600-84234200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:84230600-84235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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