Variant report

Variant	rs997869
Chromosome Location	chr1:84230125-84230126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1040576	0.80[ASN][1000 genomes]
rs10430047	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10430048	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10430063	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10430064	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489501	0.81[AFR][1000 genomes]
rs10489502	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489503	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489504	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10489506	0.81[ASN][1000 genomes]
rs10782820	0.83[ASN][1000 genomes]
rs10874419	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10874420	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10874421	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874422	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11163828	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163829	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163830	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163832	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163833	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163835	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163837	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163838	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163839	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163840	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11163841	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11163842	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12035289	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041369	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12044606	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12045391	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12048434	0.82[ASN][1000 genomes]
rs12059428	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069168	0.81[ASN][1000 genomes]
rs12077325	0.80[AFR][1000 genomes]
rs12080974	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12085122	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12087099	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12088221	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12088867	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12091588	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12092736	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12093748	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129275	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129297	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129321	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129344	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129346	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129416	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129475	0.88[ASN][1000 genomes]
rs28476757	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36017423	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4140461	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55958267	0.81[ASN][1000 genomes]
rs60860789	0.89[ASN][1000 genomes]
rs61766224	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714280	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs717234	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72952444	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74094961	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7529582	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs969125	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs969126	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84224800-84230600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:84225000-84230400	Enhancers	Primary B cells from cord blood	blood
3	chr1:84226800-84230400	Enhancers	Fetal Lung	lung
4	chr1:84227200-84230200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:84227800-84230200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:84227800-84234600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:84228000-84230200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:84228400-84235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:84229000-84230400	Enhancers	Fetal Kidney	kidney
10	chr1:84229200-84230400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:84229200-84230600	Weak transcription	Adipose Nuclei	Adipose
12	chr1:84229200-84231000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:84229600-84231200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:84229600-84231400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:84229800-84230800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:84230000-84230200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:84230000-84230400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:84230000-84230400	Enhancers	Brain Germinal Matrix	brain
19	chr1:84230000-84230600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:84230000-84230600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:84230000-84231000	Enhancers	Liver	Liver
22	chr1:84230000-84231200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr1:84230000-84232000	Weak transcription	Fetal Intestine Small	intestine
24	chr1:84230000-84232200	Enhancers	HepG2	liver

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