Variant report

Variant	rs1040576
Chromosome Location	chr1:84274266-84274267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84262652..84264184-chr1:84271934..84274320,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10157076	0.85[ASN][1000 genomes]
rs10158343	0.87[ASN][1000 genomes]
rs10430047	0.84[ASN][1000 genomes]
rs10430048	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10430063	0.84[ASN][1000 genomes]
rs10430064	0.84[ASN][1000 genomes]
rs10465742	0.87[ASN][1000 genomes]
rs10489502	0.80[ASN][1000 genomes]
rs10489503	0.80[ASN][1000 genomes]
rs10489504	0.81[ASN][1000 genomes]
rs10489506	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10489507	0.87[ASN][1000 genomes]
rs10782820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10874420	0.81[ASN][1000 genomes]
rs10874421	0.84[ASN][1000 genomes]
rs10874422	0.84[ASN][1000 genomes]
rs11163828	0.80[ASN][1000 genomes]
rs11163829	0.80[ASN][1000 genomes]
rs11163830	0.80[ASN][1000 genomes]
rs11163832	0.84[ASN][1000 genomes]
rs11163833	0.84[ASN][1000 genomes]
rs11163835	0.84[ASN][1000 genomes]
rs11163837	0.84[ASN][1000 genomes]
rs11163838	0.84[ASN][1000 genomes]
rs11163839	0.84[ASN][1000 genomes]
rs11163840	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11163841	0.82[ASN][1000 genomes]
rs11163842	0.84[ASN][1000 genomes]
rs11163847	0.87[ASN][1000 genomes]
rs11163848	0.87[ASN][1000 genomes]
rs11163850	0.87[ASN][1000 genomes]
rs11163853	0.83[ASN][1000 genomes]
rs11163854	0.83[ASN][1000 genomes]
rs12028642	0.87[ASN][1000 genomes]
rs12029461	0.87[ASN][1000 genomes]
rs12033157	0.87[ASN][1000 genomes]
rs12033859	0.82[ASN][1000 genomes]
rs12035289	0.80[ASN][1000 genomes]
rs12041369	0.81[ASN][1000 genomes]
rs12044606	0.84[ASN][1000 genomes]
rs12045391	0.84[ASN][1000 genomes]
rs12048434	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12057556	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12059428	0.84[ASN][1000 genomes]
rs12067203	0.82[ASN][1000 genomes]
rs12069168	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12070108	0.83[ASN][1000 genomes]
rs12071975	0.83[ASN][1000 genomes]
rs12080974	0.84[ASN][1000 genomes]
rs12082383	0.82[ASN][1000 genomes]
rs12082518	0.83[ASN][1000 genomes]
rs12085122	0.84[ASN][1000 genomes]
rs12085367	0.83[ASN][1000 genomes]
rs12087099	0.84[ASN][1000 genomes]
rs12088221	0.84[ASN][1000 genomes]
rs12088867	0.84[ASN][1000 genomes]
rs12091588	0.84[ASN][1000 genomes]
rs12092736	0.84[ASN][1000 genomes]
rs12093748	0.80[ASN][1000 genomes]
rs17129275	0.80[ASN][1000 genomes]
rs17129297	0.80[ASN][1000 genomes]
rs17129321	0.80[ASN][1000 genomes]
rs17129344	0.80[ASN][1000 genomes]
rs17129346	0.80[ASN][1000 genomes]
rs17129416	0.84[ASN][1000 genomes]
rs17129475	0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17129836	0.83[ASN][1000 genomes]
rs17129848	0.83[ASN][1000 genomes]
rs17129850	0.83[ASN][1000 genomes]
rs17129859	0.82[ASN][1000 genomes]
rs17129909	0.82[ASN][1000 genomes]
rs1951928	0.87[ASN][1000 genomes]
rs2057084	0.82[ASN][1000 genomes]
rs2179763	0.87[EUR][1000 genomes]
rs28476757	0.84[ASN][1000 genomes]
rs35299117	0.87[ASN][1000 genomes]
rs4001468	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4140461	0.84[ASN][1000 genomes]
rs55958267	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60743554	0.83[ASN][1000 genomes]
rs60860789	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61766224	0.80[ASN][1000 genomes]
rs61767991	0.87[ASN][1000 genomes]
rs61767992	0.87[ASN][1000 genomes]
rs61767993	0.83[ASN][1000 genomes]
rs714280	0.84[ASN][1000 genomes]
rs717234	0.84[ASN][1000 genomes]
rs72952444	0.84[ASN][1000 genomes]
rs742779	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529582	0.81[ASN][1000 genomes]
rs969125	0.84[ASN][1000 genomes]
rs969126	0.84[ASN][1000 genomes]
rs997869	0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1040576	LPHN2	cis	cerebellum	SCAN
rs1040576	CLCA3P	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84273600-84274600	Enhancers	Liver	Liver
2	chr1:84273800-84281000	Weak transcription	Adipose Nuclei	Adipose

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