Variant report

Variant	rs12082518
Chromosome Location	chr1:84292800-84292801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10157076	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10158343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1040576	0.83[ASN][1000 genomes]
rs10430048	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10465742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489506	0.84[ASN][1000 genomes]
rs10489507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10782820	0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10874420	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11163829	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11163840	1.00[JPT][hapmap]
rs11163847	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163848	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028642	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12029461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033859	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12035289	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12041369	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12048434	0.81[ASN][1000 genomes]
rs12057556	0.85[ASN][1000 genomes]
rs12059428	0.81[EUR][1000 genomes]
rs12067203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12069168	0.82[ASN][1000 genomes]
rs12070108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12071975	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074729	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12082383	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12085367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092736	0.81[EUR][1000 genomes]
rs17129275	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129297	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129321	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129344	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17129475	0.92[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17129836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17129909	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1951928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2057084	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35299117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4001468	0.85[ASN][1000 genomes]
rs55958267	0.84[ASN][1000 genomes]
rs60743554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61766224	0.91[AMR][1000 genomes]
rs61767991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742779	0.85[ASN][1000 genomes]
rs7529582	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12082518	LOC339524	cis	cerebellum	SCAN
rs12082518	LPHN2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84281600-84293000	Weak transcription	Fetal Heart	heart
3	chr1:84285800-84305000	Weak transcription	Liver	Liver
4	chr1:84286600-84293400	Weak transcription	Placenta	Placenta
5	chr1:84290200-84294200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:84292600-84292800	Enhancers	Fetal Muscle Leg	muscle
7	chr1:84292800-84293600	Weak transcription	Primary T cells from cord blood	blood

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