Variant report

Variant	rs60743554
Chromosome Location	chr1:84295350-84295351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84293779..84296274-chr1:84300748..84302325,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10157076	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10158343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1040576	0.83[ASN][1000 genomes]
rs10465742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489506	0.84[ASN][1000 genomes]
rs10489507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10782820	0.82[ASN][1000 genomes]
rs10874420	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11163829	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11163847	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163848	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028642	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12029461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12033859	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12035289	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12041369	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12048434	0.81[ASN][1000 genomes]
rs12057556	0.85[ASN][1000 genomes]
rs12059428	0.81[EUR][1000 genomes]
rs12067203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12069168	0.82[ASN][1000 genomes]
rs12070108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12071975	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074729	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12082383	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12082518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092736	0.81[EUR][1000 genomes]
rs17129275	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129297	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129321	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17129344	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17129475	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17129836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17129909	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1951928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2057084	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35299117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4001468	0.85[ASN][1000 genomes]
rs55958267	0.84[ASN][1000 genomes]
rs61766224	0.91[AMR][1000 genomes]
rs61767991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742779	0.85[ASN][1000 genomes]
rs7529582	0.84[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84285800-84305000	Weak transcription	Liver	Liver
3	chr1:84293400-84296200	Enhancers	Placenta	Placenta
4	chr1:84294400-84295600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:84294800-84295400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:84294800-84295800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:84294800-84296000	Enhancers	Fetal Muscle Leg	muscle
8	chr1:84294800-84296200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:84294800-84299600	Weak transcription	Fetal Heart	heart
10	chr1:84295000-84296000	Enhancers	Brain Germinal Matrix	brain
11	chr1:84295200-84296000	Enhancers	Brain Angular Gyrus	brain
12	chr1:84295200-84296000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:84295200-84296200	Enhancers	Adipose Nuclei	Adipose
14	chr1:84295200-84296200	Enhancers	Brain Inferior Temporal Lobe	brain

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