Variant report

Variant	rs12069168
Chromosome Location	chr1:84262493-84262494
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10157076	0.84[ASN][1000 genomes]
rs10158343	0.86[ASN][1000 genomes]
rs1040576	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10430047	0.85[ASN][1000 genomes]
rs10430048	0.85[ASN][1000 genomes]
rs10430063	0.85[ASN][1000 genomes]
rs10430064	0.85[ASN][1000 genomes]
rs10465742	0.86[ASN][1000 genomes]
rs10489502	0.81[ASN][1000 genomes]
rs10489503	0.81[ASN][1000 genomes]
rs10489504	0.82[ASN][1000 genomes]
rs10489506	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10489507	0.86[ASN][1000 genomes]
rs10782820	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10874420	0.82[ASN][1000 genomes]
rs10874421	0.85[ASN][1000 genomes]
rs10874422	0.85[ASN][1000 genomes]
rs11163828	0.81[ASN][1000 genomes]
rs11163829	0.81[ASN][1000 genomes]
rs11163830	0.81[ASN][1000 genomes]
rs11163832	0.85[ASN][1000 genomes]
rs11163833	0.85[ASN][1000 genomes]
rs11163835	0.85[ASN][1000 genomes]
rs11163837	0.85[ASN][1000 genomes]
rs11163838	0.85[ASN][1000 genomes]
rs11163839	0.85[ASN][1000 genomes]
rs11163840	0.81[ASN][1000 genomes]
rs11163841	0.83[ASN][1000 genomes]
rs11163842	0.85[ASN][1000 genomes]
rs11163847	0.86[ASN][1000 genomes]
rs11163848	0.86[ASN][1000 genomes]
rs11163850	0.86[ASN][1000 genomes]
rs11163853	0.82[ASN][1000 genomes]
rs11163854	0.82[ASN][1000 genomes]
rs12028642	0.86[ASN][1000 genomes]
rs12029461	0.86[ASN][1000 genomes]
rs12033157	0.86[ASN][1000 genomes]
rs12033859	0.81[ASN][1000 genomes]
rs12035289	0.81[ASN][1000 genomes]
rs12041369	0.82[ASN][1000 genomes]
rs12044606	0.85[ASN][1000 genomes]
rs12045391	0.85[ASN][1000 genomes]
rs12048434	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12057556	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12059428	0.85[ASN][1000 genomes]
rs12067203	0.81[ASN][1000 genomes]
rs12070108	0.82[ASN][1000 genomes]
rs12071975	0.82[ASN][1000 genomes]
rs12080974	0.85[ASN][1000 genomes]
rs12082383	0.81[ASN][1000 genomes]
rs12082518	0.82[ASN][1000 genomes]
rs12085122	0.85[ASN][1000 genomes]
rs12085367	0.82[ASN][1000 genomes]
rs12087099	0.85[ASN][1000 genomes]
rs12088221	0.85[ASN][1000 genomes]
rs12088867	0.85[ASN][1000 genomes]
rs12091588	0.85[ASN][1000 genomes]
rs12092736	0.85[ASN][1000 genomes]
rs12093748	0.81[ASN][1000 genomes]
rs17129275	0.81[ASN][1000 genomes]
rs17129297	0.81[ASN][1000 genomes]
rs17129321	0.81[ASN][1000 genomes]
rs17129344	0.81[ASN][1000 genomes]
rs17129346	0.81[ASN][1000 genomes]
rs17129416	0.85[ASN][1000 genomes]
rs17129475	0.92[ASN][1000 genomes]
rs17129836	0.82[ASN][1000 genomes]
rs17129848	0.82[ASN][1000 genomes]
rs17129850	0.82[ASN][1000 genomes]
rs17129859	0.81[ASN][1000 genomes]
rs17129909	0.81[ASN][1000 genomes]
rs1951928	0.86[ASN][1000 genomes]
rs2057084	0.81[ASN][1000 genomes]
rs2179763	0.84[EUR][1000 genomes]
rs28476757	0.85[ASN][1000 genomes]
rs35299117	0.86[ASN][1000 genomes]
rs4001468	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4140461	0.85[ASN][1000 genomes]
rs55958267	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60743554	0.82[ASN][1000 genomes]
rs60860789	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61766224	0.81[ASN][1000 genomes]
rs61767991	0.86[ASN][1000 genomes]
rs61767992	0.86[ASN][1000 genomes]
rs61767993	0.82[ASN][1000 genomes]
rs714280	0.85[ASN][1000 genomes]
rs717234	0.85[ASN][1000 genomes]
rs72952444	0.85[ASN][1000 genomes]
rs742779	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7529582	0.82[ASN][1000 genomes]
rs969125	0.85[ASN][1000 genomes]
rs969126	0.85[ASN][1000 genomes]
rs997869	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947189	chr1:84257762-84263159	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84255400-84264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:84258000-84265000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:84258200-84265200	Weak transcription	NHDF-Ad	bronchial
4	chr1:84261400-84264600	Weak transcription	Gastric	stomach
5	chr1:84262000-84262600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:84262200-84262800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:84262200-84265400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:84262400-84264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:84262400-84265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:84262400-84265000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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