Variant report

Variant	rs11163838
Chromosome Location	chr1:84249763-84249764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10157076	0.81[EUR][1000 genomes]
rs10158343	0.81[ASN][1000 genomes]
rs1040576	0.84[ASN][1000 genomes]
rs10430047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10430048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10430063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10430064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465742	0.81[ASN][1000 genomes]
rs10489502	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489503	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489504	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489506	0.85[ASN][1000 genomes]
rs10489507	0.81[ASN][1000 genomes]
rs10782820	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10874419	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10874420	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10874421	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163826	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11163828	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163829	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163830	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163832	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163833	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163835	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163840	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11163841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11163842	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163847	0.81[ASN][1000 genomes]
rs11163848	0.81[ASN][1000 genomes]
rs11163850	0.81[ASN][1000 genomes]
rs12028642	0.81[ASN][1000 genomes]
rs12029461	0.81[ASN][1000 genomes]
rs12033157	0.81[ASN][1000 genomes]
rs12035289	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041369	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12044606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12045391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048434	0.86[ASN][1000 genomes]
rs12057556	0.84[ASN][1000 genomes]
rs12059428	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069168	0.85[ASN][1000 genomes]
rs12080974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087099	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088221	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12091588	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092736	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093748	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129275	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129297	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129321	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129344	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129346	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129416	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1951928	0.81[ASN][1000 genomes]
rs28476757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299117	0.81[ASN][1000 genomes]
rs36017423	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4001468	0.84[ASN][1000 genomes]
rs4140461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55958267	0.85[ASN][1000 genomes]
rs60860789	0.93[ASN][1000 genomes]
rs61766224	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767991	0.81[ASN][1000 genomes]
rs61767992	0.81[ASN][1000 genomes]
rs714280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952444	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74094961	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs742779	0.84[ASN][1000 genomes]
rs7529582	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969126	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997869	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84245200-84252200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:84245200-84252200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:84245200-84253400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:84248200-84252600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links