Variant report

Variant	rs17129253
Chromosome Location	chr12:41744810-41744811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10735992	0.98[ASN][1000 genomes]
rs10785246	1.00[ASN][1000 genomes]
rs10785251	1.00[ASN][1000 genomes]
rs10785253	0.98[ASN][1000 genomes]
rs10880060	1.00[ASN][1000 genomes]
rs1358272	0.97[ASN][1000 genomes]
rs1379780	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1880886	0.88[ASN][1000 genomes]
rs1997192	0.98[ASN][1000 genomes]
rs2405912	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447233	0.97[ASN][1000 genomes]
rs4768344	0.88[ASN][1000 genomes]
rs4768351	1.00[ASN][1000 genomes]
rs7133896	0.83[ASN][1000 genomes]
rs7134525	0.83[ASN][1000 genomes]
rs73124826	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73128604	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41741200-41749400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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