Variant report

Variant	rs2405912
Chromosome Location	chr12:41746244-41746245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10735992	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10785246	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10785251	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10785253	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10785257	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs10880041	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs10880060	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1358272	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1379780	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1527088	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs17129253	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880886	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1997192	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2049592	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs2141108	0.80[CEU][hapmap];0.88[AMR][1000 genomes]
rs2177976	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs4447233	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4768344	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[MKK][hapmap];0.88[ASN][1000 genomes]
rs4768351	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7133896	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7134525	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs73124826	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41741200-41749400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:41745800-41750400	Weak transcription	Primary hematopoietic stem cells	blood

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