The 2.0 version of rSNPBase

Variant report

Variant rs17130265
Chromosome Location chr1:84390011-84390012
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84351000-84391400 Weak transcription Fetal Stomach stomach
2 chr1:84362600-84403200 Weak transcription Fetal Brain Male brain
3 chr1:84366400-84392800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr1:84366800-84399400 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr1:84368000-84394200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:84368200-84393400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:84368200-84393800 Weak transcription Rectal Smooth Muscle rectum
8 chr1:84368200-84394800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:84368400-84416600 Weak transcription NHLF lung
10 chr1:84368400-84428400 Weak transcription Pancreas Pancrea
11 chr1:84374200-84393000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:84376200-84392800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:84376800-84405000 Weak transcription Left Ventricle heart
14 chr1:84378600-84390200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:84380800-84392200 Weak transcription NHEK skin
16 chr1:84381000-84393400 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:84381000-84394800 Weak transcription Muscle Satellite Cultured Cells --
18 chr1:84381000-84397400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:84382600-84409800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:84383200-84393000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:84383200-84408600 Weak transcription Adipose Nuclei Adipose
22 chr1:84383400-84391000 Weak transcription Brain Angular Gyrus brain
23 chr1:84384800-84406600 Weak transcription Aorta Aorta
24 chr1:84385000-84392200 Weak transcription Brain Cingulate Gyrus brain
25 chr1:84385000-84392400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:84385000-84392800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:84385000-84393200 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr1:84385200-84408600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:84386200-84393800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:84386200-84397800 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:84386600-84391000 Weak transcription Brain Hippocampus Middle brain
32 chr1:84386600-84392800 Weak transcription Brain Substantia Nigra brain
33 chr1:84386600-84392800 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr1:84386600-84401600 Weak transcription Stomach Smooth Muscle stomach
35 chr1:84386800-84392000 Weak transcription Brain Anterior Caudate brain
36 chr1:84386800-84398400 Weak transcription HSMMtube muscle
37 chr1:84386800-84398800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr1:84386800-84403200 Weak transcription NHDF-Ad bronchial
39 chr1:84387000-84408400 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:84387000-84408400 Weak transcription Fetal Muscle Leg muscle
41 chr1:84387000-84410000 Weak transcription Brain Germinal Matrix brain
42 chr1:84388200-84391000 Weak transcription Gastric stomach
43 chr1:84388800-84402200 Weak transcription HSMM muscle
44 chr1:84389200-84390200 Enhancers iPS-15b Cell Line embryonic stem cell
45 chr1:84389600-84391200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:84389800-84390600 Strong transcription Fetal Brain Female brain
47 chr1:84390000-84390200 Enhancers K562 blood
48 chr1:84390000-84392400 Strong transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015