Variant report

Variant	rs6680155
Chromosome Location	chr1:84402597-84402598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84401511..84403535-chr1:84426504..84429096,2	MCF-7	breast:
2	chr1:84385110..84388032-chr1:84402549..84404103,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17130265	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665834	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514128	1.00[AMR][1000 genomes]
rs7537766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84362600-84403200	Weak transcription	Fetal Brain Male	brain
2	chr1:84368400-84416600	Weak transcription	NHLF	lung
3	chr1:84368400-84428400	Weak transcription	Pancreas	Pancrea
4	chr1:84376800-84405000	Weak transcription	Left Ventricle	heart
5	chr1:84382600-84409800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:84383200-84408600	Weak transcription	Adipose Nuclei	Adipose
7	chr1:84384800-84406600	Weak transcription	Aorta	Aorta
8	chr1:84385200-84408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:84386800-84403200	Weak transcription	NHDF-Ad	bronchial
10	chr1:84387000-84408400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:84387000-84408400	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:84387000-84410000	Weak transcription	Brain Germinal Matrix	brain
13	chr1:84392200-84422400	Weak transcription	Fetal Stomach	stomach
14	chr1:84392400-84420400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr1:84393400-84406000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:84394000-84408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:84395200-84403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:84395400-84403200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:84398200-84402800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:84399200-84403000	Weak transcription	K562	blood
21	chr1:84399200-84429800	Weak transcription	HSMMtube	muscle
22	chr1:84399800-84403200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:84399800-84404000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:84399800-84404800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:84400000-84403600	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:84400200-84408400	Weak transcription	Brain Anterior Caudate	brain
27	chr1:84400600-84404200	Weak transcription	Brain Angular Gyrus	brain
28	chr1:84401000-84405000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:84401600-84403600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr1:84402000-84402600	Enhancers	Brain Substantia Nigra	brain
31	chr1:84402200-84404400	Strong transcription	HSMM	muscle
32	chr1:84402400-84402800	Strong transcription	Brain Cingulate Gyrus	brain
33	chr1:84402400-84403600	Strong transcription	Fetal Brain Female	brain

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