Variant report

Variant	rs17131092
Chromosome Location	chr1:70418414-70418415
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17131040	1.00[AMR][1000 genomes]
rs17131090	1.00[AMR][1000 genomes]
rs17131091	1.00[AMR][1000 genomes]
rs2421314	1.00[AMR][1000 genomes]
rs35373978	1.00[EUR][1000 genomes]
rs74084506	1.00[EUR][1000 genomes]
rs74084562	1.00[EUR][1000 genomes]
rs74087763	1.00[EUR][1000 genomes]
rs7546018	1.00[EUR][1000 genomes]
rs7548343	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv947492	chr1:70414280-70420191	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70402000-70419800	Weak transcription	Fetal Brain Male	brain
2	chr1:70418200-70419200	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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