Variant report

Variant	rs74084562
Chromosome Location	chr1:70384271-70384272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17131058	1.00[AMR][1000 genomes]
rs17131089	1.00[AMR][1000 genomes]
rs17131092	1.00[EUR][1000 genomes]
rs17131128	1.00[AMR][1000 genomes]
rs35373978	1.00[EUR][1000 genomes]
rs74084506	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087763	1.00[EUR][1000 genomes]
rs7520980	1.00[AMR][1000 genomes]
rs7546018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7548343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:70382600-70385000	Weak transcription	Brain Germinal Matrix	brain
3	chr1:70383600-70385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:70384000-70385000	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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