Variant report

Variant	rs17132669
Chromosome Location	chr7:2804633-2804634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2797400..2800902-chr7:2803018..2805102,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10487576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487577	1.00[EUR][1000 genomes]
rs16870623	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17132628	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17132636	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17132643	0.92[EUR][1000 genomes]
rs17132648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132663	0.92[EUR][1000 genomes]
rs17132685	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17132693	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17132706	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17132714	0.92[EUR][1000 genomes]
rs17132722	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17132725	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17150393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2013926	0.92[EUR][1000 genomes]
rs2013939	0.92[EUR][1000 genomes]
rs41308332	1.00[AMR][1000 genomes]
rs57065076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57344547	0.92[EUR][1000 genomes]
rs59828898	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6978793	0.84[EUR][1000 genomes]
rs7790221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1024023	chr7:2726210-2829581	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538653	chr7:2726210-2829581	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv1032282	chr7:2789555-2820774	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2789200-2831600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:2790000-2830400	Weak transcription	Aorta	Aorta
3	chr7:2797000-2805400	Enhancers	Placenta	Placenta
4	chr7:2797600-2831200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:2798000-2827400	Weak transcription	Thymus	Thymus
6	chr7:2799200-2817000	Weak transcription	Dnd41	blood
7	chr7:2799200-2827200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:2799600-2807600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:2799600-2825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:2800200-2806400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:2800200-2815800	Weak transcription	Liver	Liver
12	chr7:2800400-2810200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:2800800-2805600	Weak transcription	GM12878-XiMat	blood
14	chr7:2800800-2808000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:2800800-2817200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:2800800-2818200	Weak transcription	Hela-S3	cervix
17	chr7:2801000-2808600	Weak transcription	Brain Germinal Matrix	brain
18	chr7:2801000-2810200	Weak transcription	Gastric	stomach
19	chr7:2801000-2810200	Weak transcription	K562	blood
20	chr7:2801000-2811000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:2801000-2812800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:2801000-2827600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:2801000-2829600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:2801000-2831600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:2801000-2831600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:2801200-2805200	Strong transcription	Primary T cells from cord blood	blood
27	chr7:2802000-2813200	Weak transcription	HSMM	muscle
28	chr7:2802000-2813400	Weak transcription	Pancreas	Pancrea
29	chr7:2802000-2817200	Weak transcription	HSMMtube	muscle
30	chr7:2802200-2815800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:2802600-2826400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:2802800-2813200	Weak transcription	Esophagus	oesophagus
33	chr7:2803200-2808800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:2803200-2813600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:2803200-2814600	Weak transcription	Fetal Brain Female	brain
36	chr7:2803200-2822600	Weak transcription	Right Ventricle	heart
37	chr7:2803400-2806800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:2803400-2814200	Weak transcription	Fetal Thymus	thymus
39	chr7:2803400-2818000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr7:2803400-2818000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:2803400-2833400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:2803600-2807800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:2803600-2807800	Weak transcription	Fetal Intestine Large	intestine
44	chr7:2803600-2808000	Weak transcription	HepG2	liver
45	chr7:2803600-2811000	Weak transcription	Right Atrium	heart
46	chr7:2803600-2811200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:2803600-2811200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:2803600-2811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:2803600-2811200	Weak transcription	A549	lung
50	chr7:2803600-2814000	Weak transcription	Brain Substantia Nigra	brain

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