Variant report

Variant	rs17132714
Chromosome Location	chr7:2831407-2831408
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2829606..2831716-chr7:2848209..2850258,2	MCF-7	breast:
2	chr7:2825414..2828285-chr7:2829208..2832535,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10487576	0.92[EUR][1000 genomes]
rs10487577	0.92[EUR][1000 genomes]
rs16870623	1.00[EUR][1000 genomes]
rs17132636	0.84[EUR][1000 genomes]
rs17132643	0.84[EUR][1000 genomes]
rs17132648	0.92[EUR][1000 genomes]
rs17132655	0.92[EUR][1000 genomes]
rs17132661	0.92[EUR][1000 genomes]
rs17132663	0.84[EUR][1000 genomes]
rs17132669	0.92[EUR][1000 genomes]
rs17132685	1.00[EUR][1000 genomes]
rs17132693	1.00[EUR][1000 genomes]
rs17132706	1.00[EUR][1000 genomes]
rs17132722	1.00[EUR][1000 genomes]
rs17132725	1.00[EUR][1000 genomes]
rs17150393	0.92[EUR][1000 genomes]
rs2013926	1.00[EUR][1000 genomes]
rs2013939	1.00[EUR][1000 genomes]
rs41308332	0.82[EUR][1000 genomes]
rs57065076	0.92[EUR][1000 genomes]
rs57344547	1.00[EUR][1000 genomes]
rs6978793	0.92[EUR][1000 genomes]
rs7790221	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2789200-2831600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:2801000-2831600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:2801000-2831600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:2803400-2833400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:2810600-2842600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:2810800-2840800	Weak transcription	Stomach Mucosa	stomach
7	chr7:2814400-2838800	Weak transcription	K562	blood
8	chr7:2815600-2831600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:2815800-2840600	Weak transcription	Fetal Brain Male	brain
10	chr7:2816200-2831600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:2816400-2831600	Weak transcription	Brain Substantia Nigra	brain
12	chr7:2819200-2831600	Weak transcription	Hela-S3	cervix
13	chr7:2822400-2835000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:2822600-2841000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:2822800-2834800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:2823600-2835000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:2824000-2842800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:2824400-2836600	Weak transcription	Small Intestine	intestine
19	chr7:2824800-2834800	Strong transcription	Fetal Intestine Small	intestine
20	chr7:2824800-2835000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:2825000-2835000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:2825000-2835000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:2825200-2831600	Weak transcription	Fetal Kidney	kidney
24	chr7:2825200-2834800	Strong transcription	NHLF	lung
25	chr7:2825400-2831800	Weak transcription	GM12878-XiMat	blood
26	chr7:2825400-2831800	Weak transcription	HUVEC	blood vessel
27	chr7:2825600-2832600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:2825600-2834600	Strong transcription	Fetal Lung	lung
29	chr7:2825600-2835000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:2825600-2835000	Strong transcription	HepG2	liver
31	chr7:2825600-2835200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:2825600-2835200	Strong transcription	Fetal Muscle Leg	muscle
33	chr7:2825800-2834800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:2826000-2835000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:2826200-2835000	Strong transcription	Fetal Intestine Large	intestine
36	chr7:2826400-2833400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:2826400-2834800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr7:2826400-2835000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr7:2826400-2835200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:2826600-2831800	Strong transcription	Lung	lung
41	chr7:2827200-2834800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:2827200-2834800	Strong transcription	Fetal Stomach	stomach
43	chr7:2827200-2835400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:2827400-2831600	Weak transcription	NHEK	skin
45	chr7:2827400-2834800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:2828000-2831600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr7:2828000-2832600	Weak transcription	Right Atrium	heart
48	chr7:2828000-2836600	Weak transcription	Psoas Muscle	Psoas
49	chr7:2828400-2831800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:2828400-2831800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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