Variant report

Variant	rs17132733
Chromosome Location	chr11:73842609-73842610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17132617	1.00[YRI][hapmap]
rs17132684	1.00[YRI][hapmap]
rs17132821	1.00[YRI][hapmap]
rs17132834	1.00[YRI][hapmap]
rs73559860	0.87[AFR][1000 genomes]
rs73561847	0.87[AFR][1000 genomes]
rs73561881	0.84[AFR][1000 genomes]
rs73563876	0.81[AFR][1000 genomes]
rs7937270	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
2	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
3	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
4	chr11:73809800-73844400	Weak transcription	HMEC	breast
5	chr11:73809800-73847200	Weak transcription	HepG2	liver
6	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
8	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
10	chr11:73817400-73845400	Weak transcription	NHDF-Ad	bronchial
11	chr11:73817400-73846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:73817600-73845800	Weak transcription	NHEK	skin
13	chr11:73817600-73849200	Weak transcription	NHLF	lung
14	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:73820400-73846400	Weak transcription	Osteobl	bone
16	chr11:73824400-73852400	Weak transcription	Colonic Mucosa	Colon
17	chr11:73824600-73846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:73825200-73843800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:73825400-73844200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:73825600-73843000	Weak transcription	Adipose Nuclei	Adipose
22	chr11:73825600-73843400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:73825600-73843600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:73825600-73845400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:73825600-73846600	Weak transcription	K562	blood
26	chr11:73825600-73847400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:73825800-73843400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:73825800-73843400	Weak transcription	GM12878-XiMat	blood
29	chr11:73825800-73843600	Weak transcription	Brain Substantia Nigra	brain
30	chr11:73825800-73844400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
32	chr11:73826000-73843400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:73826600-73843400	Weak transcription	Hela-S3	cervix
34	chr11:73828000-73843600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:73829200-73843600	Weak transcription	Fetal Kidney	kidney
36	chr11:73829400-73843200	Weak transcription	Left Ventricle	heart
37	chr11:73829400-73843600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:73829400-73846600	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:73829400-73849400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
41	chr11:73829600-73843400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:73829600-73845800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:73830200-73843800	Weak transcription	HUVEC	blood vessel
44	chr11:73831200-73846400	Weak transcription	NH-A	brain
45	chr11:73832200-73842800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:73832200-73843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:73833200-73843000	Weak transcription	Ovary	ovary
48	chr11:73833200-73843600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:73833200-73852800	Weak transcription	Pancreas	Pancrea
50	chr11:73833400-73847200	Weak transcription	Brain Cingulate Gyrus	brain

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