Variant report

Variant	rs73563876
Chromosome Location	chr11:73879588-73879589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:73879440-73879590	A549	lung:	n/a	n/a
2	CTCF	chr11:73879500-73879650	BE2_C	brain:	n/a	n/a
3	CTCF	chr11:73879480-73879630	MCF-7	breast:	n/a	n/a
4	CTCF	chr11:73879571-73879602	MCF-7	breast:	n/a	n/a
5	CTCF	chr11:73879520-73879670	HCT-116	colon:	n/a	n/a
6	CTCF	chr11:73879548-73879671	MCF-7	breast:	n/a	n/a
7	CTCF	chr11:73879580-73879730	MCF-7	breast:	n/a	n/a
8	CTCF	chr11:73879520-73879670	A549	lung:	n/a	n/a
9	CTCF	chr11:73879520-73879670	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73877006..73880114-chr11:73880554..73883460,3	MCF-7	breast:
2	chr11:73877253..73879970-chr11:73887172..73889134,2	K562	blood:
3	chr11:73870610..73873341-chr11:73878744..73880523,2	MCF-7	breast:
4	chr11:73874779..73879639-chr11:73880339..73885653,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P4HA3-2	chr11:73879278-73879658	NONHSAT022884

No data

Variant related genes	Relation type
PPME1	TF binding region
ENSG00000214517	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17132733	0.81[AFR][1000 genomes]
rs17132821	0.93[AFR][1000 genomes]
rs17132834	0.90[AFR][1000 genomes]
rs60227409	0.90[AFR][1000 genomes]
rs73549003	0.82[AFR][1000 genomes]
rs73549009	0.90[AFR][1000 genomes]
rs73549028	0.90[AFR][1000 genomes]
rs73549035	0.90[AFR][1000 genomes]
rs73561847	0.81[AFR][1000 genomes]
rs73561881	0.90[AFR][1000 genomes]
rs73561887	0.96[AFR][1000 genomes]
rs73563881	0.93[AFR][1000 genomes]
rs73565806	0.93[AFR][1000 genomes]
rs73565812	0.93[AFR][1000 genomes]
rs73565817	0.93[AFR][1000 genomes]
rs73565819	0.93[AFR][1000 genomes]
rs73565838	0.93[AFR][1000 genomes]
rs73565851	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
2	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
3	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73844800-73880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:73847800-73880800	Weak transcription	Spleen	Spleen
7	chr11:73850200-73879600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:73854000-73881000	Weak transcription	Lung	lung
9	chr11:73858600-73880200	Weak transcription	NHLF	lung
10	chr11:73858600-73880800	Weak transcription	Ovary	ovary
11	chr11:73858600-73881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:73859000-73880000	Weak transcription	HepG2	liver
13	chr11:73860000-73880600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:73865200-73879600	Strong transcription	Fetal Thymus	thymus
15	chr11:73866000-73880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:73866200-73880600	Weak transcription	Small Intestine	intestine
17	chr11:73867800-73880800	Weak transcription	Gastric	stomach
18	chr11:73868000-73881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:73869400-73879800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:73869400-73879800	Strong transcription	Primary T cells from cord blood	blood
21	chr11:73869600-73881000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:73871000-73879600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:73871000-73879600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:73871000-73879800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:73871600-73880800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:73872000-73880800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:73872200-73880200	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:73872200-73880800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:73872600-73880800	Weak transcription	Colonic Mucosa	Colon
30	chr11:73873000-73879600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:73873600-73879600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73873600-73879600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr11:73873800-73879600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:73873800-73879600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:73873800-73879600	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:73873800-73879600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr11:73873800-73879600	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr11:73873800-73879600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr11:73874200-73879600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:73874200-73879600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:73874200-73880800	Weak transcription	Pancreas	Pancrea
42	chr11:73874400-73880800	Weak transcription	Brain Substantia Nigra	brain
43	chr11:73874600-73879600	Strong transcription	Placenta	Placenta
44	chr11:73874800-73879600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:73874800-73879600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:73874800-73879600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:73874800-73879800	Strong transcription	HUVEC	blood vessel
48	chr11:73875000-73879600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:73875000-73879600	Strong transcription	Liver	Liver
50	chr11:73875000-73879600	Strong transcription	Fetal Muscle Trunk	muscle

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