Variant report

Variant	rs17133548
Chromosome Location	chr7:3598395-3598396
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3598045..3599826-chr7:3607481..3609986,2	K562	blood:
2	chr7:3596799..3598779-chr7:3598841..3601044,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10499339	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971344	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971403	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972647	1.00[ASN][1000 genomes]
rs11972798	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973367	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973741	1.00[CEU][hapmap]
rs11973763	1.00[CEU][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975595	1.00[CEU][hapmap]
rs11975833	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978422	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979623	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979985	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981125	1.00[CEU][hapmap]
rs11981422	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982674	1.00[CEU][hapmap]
rs11983288	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984433	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133260	1.00[CEU][hapmap]
rs17133303	1.00[CEU][hapmap]
rs17133354	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133377	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133394	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133406	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133423	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133429	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133437	1.00[CEU][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133448	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133485	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133545	1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150661	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17741730	1.00[ASN][1000 genomes]
rs2090941	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178629	0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs2222407	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2222408	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28528961	1.00[ASN][1000 genomes]
rs55716539	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55936101	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56175518	1.00[ASN][1000 genomes]
rs56228709	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331655	1.00[ASN][1000 genomes]
rs58297549	1.00[ASN][1000 genomes]
rs59971325	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66540307	1.00[ASN][1000 genomes]
rs66664718	1.00[ASN][1000 genomes]
rs66790405	1.00[ASN][1000 genomes]
rs67179422	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67806403	1.00[ASN][1000 genomes]
rs6945265	1.00[ASN][1000 genomes]
rs6948557	1.00[CEU][hapmap]
rs6959489	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6969711	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs73035928	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035931	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035936	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035941	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73035942	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73035975	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035985	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036002	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036757	1.00[ASN][1000 genomes]
rs73036762	1.00[ASN][1000 genomes]
rs73036799	1.00[ASN][1000 genomes]
rs73038513	1.00[ASN][1000 genomes]
rs73038551	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038553	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038557	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038581	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038584	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050200	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73051831	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778916	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7786415	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7794138	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808804	1.00[CEU][hapmap]
rs882921	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9771086	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv528715	chr7:3451251-3598581	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv605902	chr7:3464896-3598581	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1034716	chr7:3512406-3616155	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv887334	chr7:3531275-3635105	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1023888	chr7:3539750-3638242	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1034298	chr7:3539750-3646251	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1029264	chr7:3549193-3622532	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1032031	chr7:3554760-3609584	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv538675	chr7:3554760-3609584	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv464271	chr7:3556132-3605340	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605905	chr7:3556132-3605340	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1025623	chr7:3558521-3606640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv605906	chr7:3559826-3605340	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1027274	chr7:3561252-3602457	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv538676	chr7:3561252-3602457	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1034671	chr7:3565156-3607294	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv538677	chr7:3565156-3607294	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv1028274	chr7:3565356-3607155	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv538678	chr7:3565356-3607155	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1840932	chr7:3585560-3618827	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3577600-3600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:3595600-3599200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:3597400-3599800	Enhancers	Fetal Lung	lung
4	chr7:3597600-3598400	Enhancers	Fetal Muscle Leg	muscle
5	chr7:3597600-3598400	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:3597600-3598600	Enhancers	Fetal Intestine Small	intestine
7	chr7:3597600-3598800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:3597600-3598800	Enhancers	HUVEC	blood vessel
9	chr7:3597600-3599200	Enhancers	Fetal Stomach	stomach
10	chr7:3597600-3599600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:3597800-3598800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr7:3597800-3599600	Enhancers	HSMM	muscle
13	chr7:3597800-3599800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:3597800-3600200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:3598000-3598400	Enhancers	Gastric	stomach
16	chr7:3598000-3598400	Enhancers	Pancreas	Pancrea
17	chr7:3598000-3599800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr7:3598200-3598400	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:3598200-3598800	Enhancers	HSMMtube	muscle
20	chr7:3598200-3599200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:3598200-3599600	Enhancers	Adipose Nuclei	Adipose

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