Variant report

Variant	rs6948557
Chromosome Location	chr7:3439714-3439715
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:3341947..3342585-chr7:3439297..3440029,2	MCF-7	breast:
2	chr7:3427962..3429690-chr7:3438000..3440152,2	K562	blood:
3	chr7:3348530..3349530-chr7:3439336..3440173,5	MCF-7	breast:
4	chr7:3194262..3194922-chr7:3439333..3439841,2	MCF-7	breast:
5	chr7:3340063..3340822-chr7:3439252..3440083,5	MCF-7	breast:
6	chr7:3439202..3440208-chr7:3521793..3522518,3	MCF-7	breast:
7	chr7:3424678..3427459-chr7:3437708..3440654,2	MCF-7	breast:
8	chr7:3438230..3440428-chr7:3448766..3450871,2	MCF-7	breast:
9	chr7:3348413..3349355-chr7:3439267..3440144,2	MCF-7	breast:
10	chr7:3340385..3341337-chr7:3439295..3440058,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236708	Chromatin interaction
ENSG00000146555	Chromatin interaction

Extended variants
information (count: 238 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs10499339	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11971344	1.00[ASN][1000 genomes]
rs11971403	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11972647	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972733	1.00[ASN][1000 genomes]
rs11972798	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11973104	1.00[ASN][1000 genomes]
rs11973367	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11973436	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973741	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973763	1.00[CEU][hapmap]
rs11973959	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974237	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974565	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975560	0.89[EUR][1000 genomes]
rs11975595	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975833	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11978310	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979270	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979623	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11979985	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11981004	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981125	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981207	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981422	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11981998	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982548	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11982674	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983341	1.00[ASN][1000 genomes]
rs11984433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12700786	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700790	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700791	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236105	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404872	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522503	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133260	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133284	1.00[ASN][1000 genomes]
rs17133303	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133309	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133324	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133354	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133377	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133394	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133406	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133423	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133429	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133437	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133448	1.00[ASN][1000 genomes]
rs17133485	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17133545	1.00[CEU][hapmap]
rs17133548	1.00[CEU][hapmap]
rs17150661	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17741019	1.00[ASN][1000 genomes]
rs17741730	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090941	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2178629	1.00[ASN][1000 genomes]
rs2222407	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222408	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28528961	1.00[ASN][1000 genomes]
rs34431029	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34466031	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727194	1.00[ASN][1000 genomes]
rs34888067	0.84[EUR][1000 genomes]
rs35298757	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268017	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358699	1.00[ASN][1000 genomes]
rs4428572	1.00[ASN][1000 genomes]
rs4509207	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560699	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55716539	1.00[ASN][1000 genomes]
rs55936101	1.00[ASN][1000 genomes]
rs55944002	1.00[ASN][1000 genomes]
rs56064609	0.91[EUR][1000 genomes]
rs56138263	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56175518	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56193850	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217543	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228709	1.00[ASN][1000 genomes]
rs56331655	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57534358	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57535226	0.85[EUR][1000 genomes]
rs57585396	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58297549	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58338081	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021191	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59076306	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59296189	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59478367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59673826	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59971325	1.00[ASN][1000 genomes]
rs60243572	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60418263	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60682391	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61039995	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61401313	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66492969	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66540307	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66546301	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66664718	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66665337	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790405	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66941572	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67179422	1.00[ASN][1000 genomes]
rs67404848	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67447866	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67498702	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67637487	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67691723	1.00[ASN][1000 genomes]
rs67806403	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67924867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68115111	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68165343	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942774	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943523	0.93[EUR][1000 genomes]
rs6944617	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944745	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945265	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946840	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955021	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959134	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959489	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962043	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963043	1.00[ASN][1000 genomes]
rs6964818	0.85[EUR][1000 genomes]
rs6969044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969455	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969711	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974121	1.00[ASN][1000 genomes]
rs6977110	1.00[ASN][1000 genomes]
rs73034713	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034779	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035928	1.00[ASN][1000 genomes]
rs73035931	1.00[ASN][1000 genomes]
rs73035936	1.00[ASN][1000 genomes]
rs73035941	1.00[ASN][1000 genomes]
rs73035942	1.00[ASN][1000 genomes]
rs73036706	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036757	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036762	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036799	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038513	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038551	1.00[ASN][1000 genomes]
rs73038553	1.00[ASN][1000 genomes]
rs73038557	1.00[ASN][1000 genomes]
rs73038581	1.00[ASN][1000 genomes]
rs73038584	1.00[ASN][1000 genomes]
rs73046618	0.81[EUR][1000 genomes]
rs73046656	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046658	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046661	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046682	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046689	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046694	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046699	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73046702	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048614	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048617	0.85[EUR][1000 genomes]
rs73048621	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048624	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048628	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048630	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048631	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048634	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048643	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048645	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048648	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048661	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048668	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048672	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048676	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048677	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73048700	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050200	1.00[ASN][1000 genomes]
rs73050503	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050538	1.00[ASN][1000 genomes]
rs73050542	1.00[ASN][1000 genomes]
rs73051831	1.00[ASN][1000 genomes]
rs73052642	1.00[ASN][1000 genomes]
rs7778916	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779193	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782339	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783541	0.91[EUR][1000 genomes]
rs7785207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786415	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792929	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794138	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7807563	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808804	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882921	1.00[CEU][hapmap]
rs9771086	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1020764	chr7:3348458-3554820	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv538662	chr7:3348458-3554820	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1019492	chr7:3359294-3479972	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv538663	chr7:3359294-3479972	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757204	chr7:3359491-3460355	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1030484	chr7:3364990-3506102	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1018105	chr7:3365441-3506102	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1026361	chr7:3366960-3502600	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv538664	chr7:3366960-3502600	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv605893	chr7:3368197-3505231	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1015296	chr7:3381813-3560401	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv437530	chr7:3383603-3445311	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv2753963	chr7:3383603-3455249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv8031	chr7:3391964-3470279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	esv3692919	chr7:3393170-3451251	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv887327	chr7:3393170-3472464	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv1021342	chr7:3395067-3452177	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv1033743	chr7:3395234-3494122	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	nsv1031833	chr7:3395970-3449606	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv538667	chr7:3395970-3449606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	nsv464269	chr7:3400105-3472721	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
31	nsv605899	chr7:3400105-3472721	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
32	nsv1022859	chr7:3404736-3479972	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
33	nsv1029937	chr7:3408050-3506316	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
34	nsv538668	chr7:3408050-3506316	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
35	nsv1019247	chr7:3411358-3449606	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv538671	chr7:3411358-3449606	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv1016575	chr7:3411358-3479972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
38	nsv519151	chr7:3413738-3459998	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv1032892	chr7:3421647-3449621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
41	nsv887329	chr7:3424878-3490865	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
42	nsv887330	chr7:3424878-3515437	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
43	nsv887331	chr7:3434275-3475716	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3437800-3448000	Weak transcription	Fetal Heart	heart
2	chr7:3439000-3440000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:3439200-3440000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:3439200-3440000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:3439200-3440000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:3439200-3440000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:3439400-3439800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:3439400-3440000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:3439600-3440000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:3439600-3444200	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links