Variant report

Variant	rs17741019
Chromosome Location	chr7:3457296-3457297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 228 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs10499339	1.00[ASN][1000 genomes]
rs11971344	1.00[ASN][1000 genomes]
rs11971403	1.00[ASN][1000 genomes]
rs11972647	1.00[ASN][1000 genomes]
rs11972733	1.00[ASN][1000 genomes]
rs11972798	1.00[ASN][1000 genomes]
rs11973104	1.00[ASN][1000 genomes]
rs11973367	1.00[ASN][1000 genomes]
rs11973436	1.00[ASN][1000 genomes]
rs11973741	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11973763	1.00[ASN][1000 genomes]
rs11973959	1.00[ASN][1000 genomes]
rs11974237	1.00[ASN][1000 genomes]
rs11974565	1.00[ASN][1000 genomes]
rs11975595	0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs11975833	1.00[ASN][1000 genomes]
rs11978310	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11978422	1.00[ASN][1000 genomes]
rs11979270	1.00[ASN][1000 genomes]
rs11979623	1.00[ASN][1000 genomes]
rs11979985	1.00[ASN][1000 genomes]
rs11981004	1.00[ASN][1000 genomes]
rs11981125	0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs11981207	1.00[ASN][1000 genomes]
rs11981422	1.00[ASN][1000 genomes]
rs11981998	1.00[ASN][1000 genomes]
rs11982674	1.00[ASN][1000 genomes]
rs11983288	1.00[ASN][1000 genomes]
rs11983341	1.00[ASN][1000 genomes]
rs11984433	1.00[ASN][1000 genomes]
rs12700786	1.00[ASN][1000 genomes]
rs12700790	1.00[ASN][1000 genomes]
rs12700791	1.00[ASN][1000 genomes]
rs13236105	1.00[ASN][1000 genomes]
rs1404872	1.00[ASN][1000 genomes]
rs1522503	1.00[ASN][1000 genomes]
rs17133260	1.00[ASN][1000 genomes]
rs17133277	1.00[ASN][1000 genomes]
rs17133284	1.00[ASN][1000 genomes]
rs17133303	0.91[ASW][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17133309	1.00[ASN][1000 genomes]
rs17133324	0.83[ASW][hapmap];1.00[ASN][1000 genomes]
rs17133354	1.00[ASN][1000 genomes]
rs17133377	1.00[ASN][1000 genomes]
rs17133394	1.00[ASN][1000 genomes]
rs17133406	1.00[ASN][1000 genomes]
rs17133423	1.00[ASN][1000 genomes]
rs17133429	1.00[ASN][1000 genomes]
rs17133437	1.00[ASN][1000 genomes]
rs17133448	0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs17133485	1.00[ASN][1000 genomes]
rs17133545	1.00[ASN][1000 genomes]
rs17150661	1.00[ASN][1000 genomes]
rs17741730	1.00[ASN][1000 genomes]
rs2090941	1.00[ASN][1000 genomes]
rs2178629	1.00[ASN][1000 genomes]
rs2222407	1.00[ASN][1000 genomes]
rs2222408	1.00[ASN][1000 genomes]
rs28528961	1.00[ASN][1000 genomes]
rs34431029	1.00[ASN][1000 genomes]
rs34466031	1.00[ASN][1000 genomes]
rs34727194	1.00[ASN][1000 genomes]
rs35298757	1.00[ASN][1000 genomes]
rs4268017	1.00[ASN][1000 genomes]
rs4358699	1.00[ASN][1000 genomes]
rs4428572	1.00[ASN][1000 genomes]
rs4509207	1.00[ASN][1000 genomes]
rs4560699	1.00[ASN][1000 genomes]
rs55716539	1.00[ASN][1000 genomes]
rs55936101	1.00[ASN][1000 genomes]
rs55944002	1.00[ASN][1000 genomes]
rs56138263	1.00[ASN][1000 genomes]
rs56175518	1.00[ASN][1000 genomes]
rs56193850	1.00[ASN][1000 genomes]
rs56217543	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56228709	1.00[ASN][1000 genomes]
rs56331655	1.00[ASN][1000 genomes]
rs57534358	1.00[ASN][1000 genomes]
rs57585396	1.00[ASN][1000 genomes]
rs58297549	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58338081	1.00[ASN][1000 genomes]
rs59021191	1.00[ASN][1000 genomes]
rs59076306	1.00[ASN][1000 genomes]
rs59296189	1.00[ASN][1000 genomes]
rs59478367	1.00[ASN][1000 genomes]
rs59673826	1.00[ASN][1000 genomes]
rs59971325	1.00[ASN][1000 genomes]
rs60243572	1.00[ASN][1000 genomes]
rs60418263	1.00[ASN][1000 genomes]
rs60682391	1.00[ASN][1000 genomes]
rs61039995	1.00[ASN][1000 genomes]
rs61401313	1.00[ASN][1000 genomes]
rs66492969	1.00[ASN][1000 genomes]
rs66540307	1.00[ASN][1000 genomes]
rs66546301	1.00[ASN][1000 genomes]
rs66664718	1.00[ASN][1000 genomes]
rs66665337	1.00[ASN][1000 genomes]
rs66790405	1.00[ASN][1000 genomes]
rs66941572	1.00[ASN][1000 genomes]
rs67179422	1.00[ASN][1000 genomes]
rs67447866	1.00[ASN][1000 genomes]
rs67498702	1.00[ASN][1000 genomes]
rs67637487	1.00[ASN][1000 genomes]
rs67691723	1.00[ASN][1000 genomes]
rs67806403	1.00[ASN][1000 genomes]
rs67924867	1.00[ASN][1000 genomes]
rs68115111	1.00[ASN][1000 genomes]
rs68165343	1.00[ASN][1000 genomes]
rs6942774	1.00[ASN][1000 genomes]
rs6944617	1.00[ASN][1000 genomes]
rs6944745	1.00[ASN][1000 genomes]
rs6945265	1.00[ASN][1000 genomes]
rs6945914	1.00[ASN][1000 genomes]
rs6946840	1.00[ASN][1000 genomes]
rs6948360	0.85[YRI][hapmap]
rs6948557	1.00[ASN][1000 genomes]
rs6952184	1.00[ASN][1000 genomes]
rs6955021	1.00[ASN][1000 genomes]
rs6959134	1.00[ASN][1000 genomes]
rs6959489	1.00[ASN][1000 genomes]
rs6962043	1.00[ASN][1000 genomes]
rs6963043	1.00[ASN][1000 genomes]
rs6969044	1.00[ASN][1000 genomes]
rs6969455	1.00[ASN][1000 genomes]
rs6969711	0.83[ASW][hapmap];1.00[ASN][1000 genomes]
rs6974121	1.00[ASN][1000 genomes]
rs6977110	1.00[ASN][1000 genomes]
rs73034713	1.00[ASN][1000 genomes]
rs73034779	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73035928	1.00[ASN][1000 genomes]
rs73035931	1.00[ASN][1000 genomes]
rs73035936	1.00[ASN][1000 genomes]
rs73035941	1.00[ASN][1000 genomes]
rs73035942	1.00[ASN][1000 genomes]
rs73035975	1.00[ASN][1000 genomes]
rs73035985	1.00[ASN][1000 genomes]
rs73036002	1.00[ASN][1000 genomes]
rs73036706	1.00[ASN][1000 genomes]
rs73036757	1.00[ASN][1000 genomes]
rs73036762	1.00[ASN][1000 genomes]
rs73036799	1.00[ASN][1000 genomes]
rs73038513	1.00[ASN][1000 genomes]
rs73038551	1.00[ASN][1000 genomes]
rs73038553	1.00[ASN][1000 genomes]
rs73038557	1.00[ASN][1000 genomes]
rs73038581	1.00[ASN][1000 genomes]
rs73038584	1.00[ASN][1000 genomes]
rs73046656	1.00[ASN][1000 genomes]
rs73046658	1.00[ASN][1000 genomes]
rs73046661	1.00[ASN][1000 genomes]
rs73046682	1.00[ASN][1000 genomes]
rs73046689	1.00[ASN][1000 genomes]
rs73046694	1.00[ASN][1000 genomes]
rs73046699	1.00[ASN][1000 genomes]
rs73046702	1.00[ASN][1000 genomes]
rs73048614	1.00[ASN][1000 genomes]
rs73048621	1.00[ASN][1000 genomes]
rs73048624	1.00[ASN][1000 genomes]
rs73048628	1.00[ASN][1000 genomes]
rs73048630	1.00[ASN][1000 genomes]
rs73048631	1.00[ASN][1000 genomes]
rs73048634	1.00[ASN][1000 genomes]
rs73048643	1.00[ASN][1000 genomes]
rs73048645	1.00[ASN][1000 genomes]
rs73048648	1.00[ASN][1000 genomes]
rs73048655	1.00[ASN][1000 genomes]
rs73048661	1.00[ASN][1000 genomes]
rs73048668	1.00[ASN][1000 genomes]
rs73048672	1.00[ASN][1000 genomes]
rs73048676	1.00[ASN][1000 genomes]
rs73048677	1.00[ASN][1000 genomes]
rs73048700	1.00[ASN][1000 genomes]
rs73050200	1.00[ASN][1000 genomes]
rs73050503	1.00[ASN][1000 genomes]
rs73050538	1.00[ASN][1000 genomes]
rs73050542	1.00[ASN][1000 genomes]
rs73051831	1.00[ASN][1000 genomes]
rs73052642	1.00[ASN][1000 genomes]
rs7778916	1.00[ASN][1000 genomes]
rs7779193	1.00[ASN][1000 genomes]
rs7782339	1.00[ASN][1000 genomes]
rs7785207	1.00[ASN][1000 genomes]
rs7786415	1.00[ASN][1000 genomes]
rs7792929	1.00[ASN][1000 genomes]
rs7794138	1.00[ASN][1000 genomes]
rs7807563	1.00[ASN][1000 genomes]
rs9771086	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1020764	chr7:3348458-3554820	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv538662	chr7:3348458-3554820	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1019492	chr7:3359294-3479972	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv538663	chr7:3359294-3479972	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757204	chr7:3359491-3460355	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1030484	chr7:3364990-3506102	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1018105	chr7:3365441-3506102	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1026361	chr7:3366960-3502600	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv538664	chr7:3366960-3502600	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv605893	chr7:3368197-3505231	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1015296	chr7:3381813-3560401	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv8031	chr7:3391964-3470279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv887327	chr7:3393170-3472464	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv1033743	chr7:3395234-3494122	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv464269	chr7:3400105-3472721	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv605899	chr7:3400105-3472721	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv1022859	chr7:3404736-3479972	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	nsv1029937	chr7:3408050-3506316	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	nsv538668	chr7:3408050-3506316	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	nsv1016575	chr7:3411358-3479972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	nsv519151	chr7:3413738-3459998	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
31	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
32	nsv887329	chr7:3424878-3490865	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
33	nsv887330	chr7:3424878-3515437	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
34	nsv887331	chr7:3434275-3475716	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
35	nsv823985	chr7:3442250-3469844	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv823986	chr7:3442319-3469844	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv818473	chr7:3445311-3464896	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv605901	chr7:3445311-3479432	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv1025850	chr7:3446819-3474084	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv528715	chr7:3451251-3598581	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
41	nsv887332	chr7:3455249-3521000	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3454800-3457600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:3456000-3460200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:3456200-3457600	Enhancers	NHEK	skin
4	chr7:3456600-3457600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:3456800-3465800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:3457000-3457400	Enhancers	Fetal Kidney	kidney
7	chr7:3457000-3457600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:3457000-3457600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:3457200-3457600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:3457200-3457600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:3457200-3457800	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links