Variant report

Variant	rs6963043
Chromosome Location	chr7:3427014-3427015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3424678..3427459-chr7:3437708..3440654,2	MCF-7	breast:
2	chr7:3425641..3430182-chr7:3430225..3435357,4	MCF-7	breast:

Extended variants
information (count: 231 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10499339	1.00[ASN][1000 genomes]
rs11971344	1.00[ASN][1000 genomes]
rs11971403	1.00[ASN][1000 genomes]
rs11972647	1.00[ASN][1000 genomes]
rs11972733	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972798	1.00[ASN][1000 genomes]
rs11973104	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973367	1.00[ASN][1000 genomes]
rs11973436	1.00[ASN][1000 genomes]
rs11973741	1.00[ASN][1000 genomes]
rs11973959	1.00[ASN][1000 genomes]
rs11974237	1.00[ASN][1000 genomes]
rs11974565	1.00[ASN][1000 genomes]
rs11975595	1.00[ASN][1000 genomes]
rs11975833	1.00[ASN][1000 genomes]
rs11978310	1.00[ASN][1000 genomes]
rs11979270	1.00[ASN][1000 genomes]
rs11979623	1.00[ASN][1000 genomes]
rs11979985	1.00[ASN][1000 genomes]
rs11981004	1.00[ASN][1000 genomes]
rs11981125	1.00[ASN][1000 genomes]
rs11981207	1.00[ASN][1000 genomes]
rs11981422	1.00[ASN][1000 genomes]
rs11981998	1.00[ASN][1000 genomes]
rs11982674	1.00[ASN][1000 genomes]
rs11983341	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984433	1.00[ASN][1000 genomes]
rs12700786	1.00[ASN][1000 genomes]
rs12700790	1.00[ASN][1000 genomes]
rs12700791	1.00[ASN][1000 genomes]
rs13236105	1.00[ASN][1000 genomes]
rs1404872	1.00[ASN][1000 genomes]
rs1522503	1.00[ASN][1000 genomes]
rs17133260	1.00[ASN][1000 genomes]
rs17133277	1.00[ASN][1000 genomes]
rs17133284	1.00[ASN][1000 genomes]
rs17133303	1.00[ASN][1000 genomes]
rs17133309	1.00[ASN][1000 genomes]
rs17133324	1.00[ASN][1000 genomes]
rs17133354	1.00[ASN][1000 genomes]
rs17133377	1.00[ASN][1000 genomes]
rs17133394	1.00[ASN][1000 genomes]
rs17133406	1.00[ASN][1000 genomes]
rs17133423	1.00[ASN][1000 genomes]
rs17133429	1.00[ASN][1000 genomes]
rs17133437	1.00[ASN][1000 genomes]
rs17133448	1.00[ASN][1000 genomes]
rs17133485	1.00[ASN][1000 genomes]
rs17150661	1.00[ASN][1000 genomes]
rs17741019	1.00[ASN][1000 genomes]
rs17741730	1.00[ASN][1000 genomes]
rs2090941	1.00[ASN][1000 genomes]
rs2178629	1.00[ASN][1000 genomes]
rs2222407	1.00[ASN][1000 genomes]
rs2222408	1.00[ASN][1000 genomes]
rs28528961	1.00[ASN][1000 genomes]
rs34431029	1.00[ASN][1000 genomes]
rs34466031	1.00[ASN][1000 genomes]
rs34727194	1.00[ASN][1000 genomes]
rs35298757	1.00[ASN][1000 genomes]
rs4268017	1.00[ASN][1000 genomes]
rs4358699	1.00[ASN][1000 genomes]
rs4428572	0.94[YRI][hapmap];1.00[ASN][1000 genomes]
rs4509207	1.00[ASN][1000 genomes]
rs4560699	1.00[ASN][1000 genomes]
rs55716539	1.00[ASN][1000 genomes]
rs55936101	1.00[ASN][1000 genomes]
rs55944002	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138263	1.00[ASN][1000 genomes]
rs56175518	1.00[ASN][1000 genomes]
rs56193850	1.00[ASN][1000 genomes]
rs56217543	1.00[ASN][1000 genomes]
rs56228709	1.00[ASN][1000 genomes]
rs56331655	1.00[ASN][1000 genomes]
rs57534358	1.00[ASN][1000 genomes]
rs57585396	1.00[ASN][1000 genomes]
rs58297549	1.00[ASN][1000 genomes]
rs58338081	1.00[ASN][1000 genomes]
rs59021191	1.00[ASN][1000 genomes]
rs59076306	1.00[ASN][1000 genomes]
rs59296189	1.00[ASN][1000 genomes]
rs59478367	1.00[ASN][1000 genomes]
rs59673826	1.00[ASN][1000 genomes]
rs59971325	1.00[ASN][1000 genomes]
rs60243572	1.00[ASN][1000 genomes]
rs60418263	1.00[ASN][1000 genomes]
rs60682391	1.00[ASN][1000 genomes]
rs61039995	1.00[ASN][1000 genomes]
rs61401313	1.00[ASN][1000 genomes]
rs66492969	1.00[ASN][1000 genomes]
rs66540307	1.00[ASN][1000 genomes]
rs66546301	1.00[ASN][1000 genomes]
rs66664718	1.00[ASN][1000 genomes]
rs66665337	1.00[ASN][1000 genomes]
rs66790405	1.00[ASN][1000 genomes]
rs66941572	1.00[ASN][1000 genomes]
rs67179422	1.00[ASN][1000 genomes]
rs67447866	1.00[ASN][1000 genomes]
rs67498702	1.00[ASN][1000 genomes]
rs67637487	1.00[ASN][1000 genomes]
rs67691723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67806403	1.00[ASN][1000 genomes]
rs67924867	1.00[ASN][1000 genomes]
rs68115111	1.00[ASN][1000 genomes]
rs68165343	1.00[ASN][1000 genomes]
rs6942774	1.00[ASN][1000 genomes]
rs6944617	1.00[ASN][1000 genomes]
rs6944745	1.00[ASN][1000 genomes]
rs6945265	1.00[ASN][1000 genomes]
rs6945914	1.00[ASN][1000 genomes]
rs6946840	1.00[ASN][1000 genomes]
rs6948557	1.00[ASN][1000 genomes]
rs6952184	1.00[ASN][1000 genomes]
rs6955021	1.00[ASN][1000 genomes]
rs6959134	1.00[ASN][1000 genomes]
rs6959489	1.00[ASN][1000 genomes]
rs6962043	1.00[ASN][1000 genomes]
rs6969044	1.00[ASN][1000 genomes]
rs6969455	1.00[ASN][1000 genomes]
rs6969711	1.00[ASN][1000 genomes]
rs6974121	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977110	1.00[ASN][1000 genomes]
rs73034713	1.00[ASN][1000 genomes]
rs73034779	1.00[ASN][1000 genomes]
rs73035928	1.00[ASN][1000 genomes]
rs73035931	1.00[ASN][1000 genomes]
rs73036706	1.00[ASN][1000 genomes]
rs73036757	1.00[ASN][1000 genomes]
rs73036762	1.00[ASN][1000 genomes]
rs73036799	1.00[ASN][1000 genomes]
rs73038513	1.00[ASN][1000 genomes]
rs73038551	1.00[ASN][1000 genomes]
rs73038553	1.00[ASN][1000 genomes]
rs73038557	1.00[ASN][1000 genomes]
rs73038581	1.00[ASN][1000 genomes]
rs73038584	1.00[ASN][1000 genomes]
rs73046656	1.00[ASN][1000 genomes]
rs73046658	1.00[ASN][1000 genomes]
rs73046661	1.00[ASN][1000 genomes]
rs73046682	1.00[ASN][1000 genomes]
rs73046689	1.00[ASN][1000 genomes]
rs73046694	1.00[ASN][1000 genomes]
rs73046699	1.00[ASN][1000 genomes]
rs73046702	1.00[ASN][1000 genomes]
rs73048614	1.00[ASN][1000 genomes]
rs73048621	1.00[ASN][1000 genomes]
rs73048624	1.00[ASN][1000 genomes]
rs73048628	1.00[ASN][1000 genomes]
rs73048630	1.00[ASN][1000 genomes]
rs73048631	1.00[ASN][1000 genomes]
rs73048634	1.00[ASN][1000 genomes]
rs73048643	1.00[ASN][1000 genomes]
rs73048645	1.00[ASN][1000 genomes]
rs73048648	1.00[ASN][1000 genomes]
rs73048655	1.00[ASN][1000 genomes]
rs73048661	1.00[ASN][1000 genomes]
rs73048668	1.00[ASN][1000 genomes]
rs73048672	1.00[ASN][1000 genomes]
rs73048676	1.00[ASN][1000 genomes]
rs73048677	1.00[ASN][1000 genomes]
rs73048700	1.00[ASN][1000 genomes]
rs73050200	1.00[ASN][1000 genomes]
rs73050503	1.00[ASN][1000 genomes]
rs73050538	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050542	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73051831	1.00[ASN][1000 genomes]
rs73052642	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778916	1.00[ASN][1000 genomes]
rs7779193	1.00[ASN][1000 genomes]
rs7782339	1.00[ASN][1000 genomes]
rs7785207	1.00[ASN][1000 genomes]
rs7786415	1.00[ASN][1000 genomes]
rs7792929	1.00[ASN][1000 genomes]
rs7794138	1.00[ASN][1000 genomes]
rs7807563	1.00[ASN][1000 genomes]
rs9771086	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1020764	chr7:3348458-3554820	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv538662	chr7:3348458-3554820	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1019492	chr7:3359294-3479972	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv538663	chr7:3359294-3479972	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757204	chr7:3359491-3460355	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1030484	chr7:3364990-3506102	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1018105	chr7:3365441-3506102	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1026361	chr7:3366960-3502600	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv538664	chr7:3366960-3502600	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv605893	chr7:3368197-3505231	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1034410	chr7:3377927-3434703	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv1033448	chr7:3378394-3433229	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv538665	chr7:3378394-3433229	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv605895	chr7:3381789-3431050	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv519027	chr7:3381789-3434275	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv605896	chr7:3381789-3434275	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1020542	chr7:3381813-3434703	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1015296	chr7:3381813-3560401	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	nsv437530	chr7:3383603-3445311	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv2753963	chr7:3383603-3455249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	nsv605898	chr7:3384144-3434275	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv8031	chr7:3391964-3470279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
32	nsv437980	chr7:3392526-3427014	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3692919	chr7:3393170-3451251	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	nsv887327	chr7:3393170-3472464	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
35	nsv1033720	chr7:3395067-3427190	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv1024282	chr7:3395067-3439211	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1021342	chr7:3395067-3452177	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv1033743	chr7:3395234-3494122	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv1031833	chr7:3395970-3449606	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv538667	chr7:3395970-3449606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv464269	chr7:3400105-3472721	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
42	nsv605899	chr7:3400105-3472721	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
43	nsv1022859	chr7:3404736-3479972	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
44	nsv1029937	chr7:3408050-3506316	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
45	nsv538668	chr7:3408050-3506316	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
46	nsv1019247	chr7:3411358-3449606	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
47	nsv538671	chr7:3411358-3449606	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
48	nsv1016575	chr7:3411358-3479972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
49	nsv519151	chr7:3413738-3459998	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
50	nsv1032892	chr7:3421647-3449621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3419200-3433200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:3421600-3430400	Weak transcription	HepG2	liver
3	chr7:3424200-3427400	Enhancers	Fetal Brain Male	brain
4	chr7:3426600-3427600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:3427000-3429000	Weak transcription	Aorta	Aorta

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