Variant report

Variant	rs17134078
Chromosome Location	chr7:50937794-50937795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10486745	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs11509225	0.86[ASN][1000 genomes]
rs12718987	0.85[ASN][1000 genomes]
rs12718991	0.84[ASN][1000 genomes]
rs13233520	0.85[ASN][1000 genomes]
rs17134073	0.91[ASN][1000 genomes]
rs17152184	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs17152188	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs17725573	0.84[ASN][1000 genomes]
rs34591416	0.90[ASN][1000 genomes]
rs34790261	0.88[ASN][1000 genomes]
rs35571129	0.92[ASN][1000 genomes]
rs36020647	0.87[ASN][1000 genomes]
rs36040165	0.87[ASN][1000 genomes]
rs36100248	0.87[ASN][1000 genomes]
rs36106319	0.87[ASN][1000 genomes]
rs4446688	0.81[ASN][1000 genomes]
rs55694818	0.84[ASN][1000 genomes]
rs55853103	0.92[ASN][1000 genomes]
rs984450	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv524131	chr7:50933370-50961303	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527462	chr7:50933370-50989383	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888022	chr7:50933678-51046674	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50933600-50937800	Enhancers	Fetal Heart	heart
2	chr7:50935400-50939000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:50935600-50938200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:50935800-50938000	Enhancers	NH-A	brain
5	chr7:50936000-50938000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:50936000-50938200	Enhancers	NHDF-Ad	bronchial
7	chr7:50936200-50937800	Enhancers	Hela-S3	cervix
8	chr7:50936200-50938000	Enhancers	HMEC	breast
9	chr7:50936200-50938400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:50936200-50940200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:50936400-50938000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:50936400-50938600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:50936400-50938600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:50936400-50938800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:50936400-50939600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:50936400-50940000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:50936600-50937800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:50936800-50938000	Enhancers	Brain Anterior Caudate	brain
19	chr7:50936800-50938000	Enhancers	HSMM	muscle
20	chr7:50936800-50938000	Enhancers	HSMMtube	muscle
21	chr7:50936800-50938200	Enhancers	Aorta	Aorta
22	chr7:50937000-50937800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:50937200-50938600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:50937400-50939200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:50937600-50937800	Enhancers	Brain Angular Gyrus	brain
26	chr7:50937600-50937800	Enhancers	Brain Hippocampus Middle	brain
27	chr7:50937600-50938000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:50937600-50938000	Enhancers	Brain Substantia Nigra	brain
29	chr7:50937600-50938000	Enhancers	A549	lung
30	chr7:50937600-50938200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:50937600-50938200	Enhancers	Brain Cingulate Gyrus	brain
32	chr7:50937600-50938400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:50937600-50938600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:50937600-50938600	Enhancers	Osteobl	bone
35	chr7:50937600-50938800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:50937600-50939200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr7:50937600-50942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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