Variant report

Variant	rs35571129
Chromosome Location	chr7:50935294-50935295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10486745	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11509225	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12718987	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12718991	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13233520	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13235836	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13309489	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17134073	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17134078	0.92[ASN][1000 genomes]
rs17152184	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17152188	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17725573	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34469633	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34591416	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34709117	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34790261	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36020647	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36040165	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36100248	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36106319	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4446688	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55694818	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55853103	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58935441	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71540281	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71540282	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs984450	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv524131	chr7:50933370-50961303	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527462	chr7:50933370-50989383	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888022	chr7:50933678-51046674	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50926200-50935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:50927000-50935600	Weak transcription	Pancreas	Pancrea
3	chr7:50933200-50936400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:50933400-50936400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:50933400-50936800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:50933600-50937600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:50933600-50937800	Enhancers	Fetal Heart	heart
8	chr7:50933800-50936000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:50934000-50935600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:50934400-50935400	Enhancers	Left Ventricle	heart
11	chr7:50934400-50936200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:50934400-50936400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:50934600-50936400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:50934600-50936400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:50934800-50935400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:50934800-50936800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:50935000-50935800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:50935000-50936000	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr7:50935000-50936200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:50935000-50936200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:50935000-50936400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:50935000-50936400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr7:50935200-50936600	Enhancers	HUES64 Cell Line	embryonic stem cell

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