Variant report

Variant	rs17134862
Chromosome Location	chr5:112029703-112029704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11949316	1.00[AMR][1000 genomes]
rs11949744	1.00[AMR][1000 genomes]
rs11952365	1.00[AMR][1000 genomes]
rs11953322	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11955449	1.00[AMR][1000 genomes]
rs11960936	0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs17134945	0.86[ASW][hapmap]
rs2289485	0.86[ASW][hapmap];1.00[AMR][1000 genomes]
rs6867422	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888572	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719122	1.00[AMR][1000 genomes]
rs7722209	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112021800-112030600	Weak transcription	Osteobl	bone
2	chr5:112022600-112030600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:112027000-112032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:112027200-112030600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:112027200-112030800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:112027600-112030400	Weak transcription	Dnd41	blood
7	chr5:112029000-112030200	Enhancers	K562	blood
8	chr5:112029200-112030600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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