Variant report

Variant	rs6867422
Chromosome Location	chr5:112035149-112035150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11948681	1.00[EUR][1000 genomes]
rs11949316	1.00[AMR][1000 genomes]
rs11949744	1.00[AMR][1000 genomes]
rs11950732	1.00[EUR][1000 genomes]
rs11952365	1.00[AMR][1000 genomes]
rs11953322	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11955449	1.00[AMR][1000 genomes]
rs13358140	0.88[YRI][hapmap]
rs17134862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2289485	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3887380	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs62626346	1.00[EUR][1000 genomes]
rs6868149	1.00[EUR][1000 genomes]
rs6876301	1.00[EUR][1000 genomes]
rs6888572	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7719122	1.00[AMR][1000 genomes]
rs7722209	1.00[AMR][1000 genomes]
rs7724741	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112033400-112039400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:112033400-112042600	Weak transcription	Ovary	ovary
3	chr5:112034000-112036800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:112034000-112039200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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