Variant report

Variant	rs6876301
Chromosome Location	chr5:112079207-112079208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112078508..112080927-chr5:112081465..112083694,2	MCF-7	breast:
2	chr5:112042040..112044749-chr5:112077105..112080754,4	K562	blood:
3	chr5:112070264..112074990-chr5:112075213..112080518,8	K562	blood:
4	chr5:112036075..112039383-chr5:112077944..112080401,3	K562	blood:
5	chr5:112070801..112074184-chr5:112077517..112081527,4	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11948681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11950732	1.00[EUR][1000 genomes]
rs11953322	1.00[EUR][1000 genomes]
rs11960936	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17134873	1.00[AMR][1000 genomes]
rs2289485	1.00[EUR][1000 genomes]
rs3887380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088629	1.00[EUR][1000 genomes]
rs62626346	1.00[EUR][1000 genomes]
rs6867422	1.00[EUR][1000 genomes]
rs6868149	1.00[EUR][1000 genomes]
rs6884079	0.81[AFR][1000 genomes]
rs6888572	1.00[EUR][1000 genomes]
rs7724741	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv462387	chr5:112053911-112124369	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv599393	chr5:112053911-112124369	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112073800-112086800	Weak transcription	Gastric	stomach
2	chr5:112074000-112095000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:112074200-112079600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:112074200-112081400	Weak transcription	Esophagus	oesophagus
5	chr5:112074200-112083800	Weak transcription	Ovary	ovary
6	chr5:112074200-112084400	Weak transcription	Pancreas	Pancrea
7	chr5:112074200-112093200	Weak transcription	Aorta	Aorta
8	chr5:112074400-112079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:112074400-112079600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:112074400-112079600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:112074400-112081400	Weak transcription	Right Atrium	heart
12	chr5:112074400-112083800	Weak transcription	Psoas Muscle	Psoas
13	chr5:112074400-112083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:112074400-112090400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:112074400-112090400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:112074400-112091000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:112074400-112093200	Weak transcription	Right Ventricle	heart
18	chr5:112074400-112094000	Weak transcription	Fetal Intestine Small	intestine
19	chr5:112074400-112095200	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:112074400-112095600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:112074400-112095600	Weak transcription	Fetal Thymus	thymus
22	chr5:112074400-112095800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr5:112074400-112102800	Weak transcription	Fetal Stomach	stomach
24	chr5:112074400-112103400	Weak transcription	Left Ventricle	heart
25	chr5:112074400-112119800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:112074400-112125600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:112074400-112128600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:112074600-112090400	Weak transcription	Primary B cells from cord blood	blood
29	chr5:112074600-112103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:112074800-112097600	Weak transcription	HMEC	breast
31	chr5:112075000-112093000	Weak transcription	Liver	Liver
32	chr5:112075000-112095200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:112075200-112092600	Weak transcription	HSMM	muscle
34	chr5:112075200-112094400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:112075200-112103000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:112075400-112091000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:112075400-112097400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:112075400-112101600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:112075600-112095600	Weak transcription	Dnd41	blood
40	chr5:112075600-112095800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:112076000-112090800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr5:112076000-112095400	Weak transcription	NH-A	brain
43	chr5:112076200-112097000	Weak transcription	NHLF	lung
44	chr5:112077600-112079800	Weak transcription	Fetal Brain Female	brain
45	chr5:112078000-112095800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:112078400-112079600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr5:112078400-112091200	Weak transcription	Primary T cells from cord blood	blood
48	chr5:112078600-112093000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:112078600-112095800	Weak transcription	GM12878-XiMat	blood
50	chr5:112078800-112079600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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