The 2.0 version of rSNPBase

Variant report

Variant rs17135254
Chromosome Location chr5:112336377-112336378
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112313800-112337600 Weak transcription Placenta Amnion Placenta Amnion
2 chr5:112314000-112337200 Weak transcription Lung lung
3 chr5:112314000-112338200 Weak transcription Gastric stomach
4 chr5:112314200-112337000 Weak transcription HSMMtube muscle
5 chr5:112314200-112338200 Weak transcription Aorta Aorta
6 chr5:112314200-112341000 Weak transcription Small Intestine intestine
7 chr5:112314200-112349600 Weak transcription Brain Cingulate Gyrus brain
8 chr5:112314200-112356800 Weak transcription Stomach Mucosa stomach
9 chr5:112314200-112362600 Weak transcription Colonic Mucosa Colon
10 chr5:112314400-112338400 Weak transcription Stomach Smooth Muscle stomach
11 chr5:112314800-112337200 Weak transcription Brain Inferior Temporal Lobe brain
12 chr5:112314800-112349200 Weak transcription Brain Substantia Nigra brain
13 chr5:112315600-112339400 Weak transcription Hela-S3 cervix
14 chr5:112315600-112362600 Weak transcription Brain Angular Gyrus brain
15 chr5:112316000-112337000 Weak transcription A549 lung
16 chr5:112317000-112338200 Weak transcription Left Ventricle heart
17 chr5:112317800-112366200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr5:112318000-112336400 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr5:112318400-112365600 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr5:112319400-112336800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr5:112319800-112363800 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr5:112320000-112364200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr5:112320200-112338200 Weak transcription H9 Cell Line embryonic stem cell
24 chr5:112320200-112338200 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr5:112320600-112337200 Weak transcription Pancreas Pancrea
26 chr5:112320600-112362600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr5:112321200-112364800 Strong transcription HUES64 Cell Line embryonic stem cell
28 chr5:112321400-112363800 Strong transcription Primary monocytes fromperipheralblood blood
29 chr5:112321600-112353800 Weak transcription Fetal Heart heart
30 chr5:112322200-112341000 Strong transcription Primary neutrophils fromperipheralblood blood
31 chr5:112322600-112362400 Weak transcription Psoas Muscle Psoas
32 chr5:112322800-112362400 Weak transcription Esophagus oesophagus
33 chr5:112324800-112336600 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr5:112324800-112369800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr5:112326000-112336800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr5:112326800-112337000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr5:112327400-112340600 Strong transcription Primary B cells from cord blood blood
38 chr5:112327800-112364600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr5:112328800-112341800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:112329400-112356800 Strong transcription Primary B cells from peripheral blood blood
41 chr5:112330200-112337000 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr5:112330200-112338200 Weak transcription Spleen Spleen
43 chr5:112330200-112362800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr5:112330400-112336400 Weak transcription Muscle Satellite Cultured Cells --
45 chr5:112330400-112336800 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr5:112330600-112337000 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr5:112330800-112336600 Weak transcription Liver Liver
48 chr5:112330800-112337200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr5:112331200-112336400 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr5:112331200-112337800 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015