Variant report

Variant	rs17135612
Chromosome Location	chr11:77092558-77092559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17135577	1.00[AMR][1000 genomes]
rs17135593	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs58110154	1.00[AMR][1000 genomes]
rs58184314	1.00[AMR][1000 genomes]
rs7126626	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:77047200-77096000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea
4	chr11:77064200-77102800	Weak transcription	Brain Substantia Nigra	brain
5	chr11:77067000-77092800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:77067000-77093800	Weak transcription	Psoas Muscle	Psoas
7	chr11:77067000-77097000	Weak transcription	Esophagus	oesophagus
8	chr11:77067200-77111800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:77068800-77097000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:77070000-77102000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:77075200-77097200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:77077600-77092800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:77081000-77093400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:77081000-77094600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:77081200-77095600	Strong transcription	GM12878-XiMat	blood
16	chr11:77081200-77096600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:77082000-77095600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:77082000-77096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:77082200-77092800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:77082200-77095800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:77082400-77104200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:77084000-77093200	Weak transcription	Hela-S3	cervix
23	chr11:77084000-77111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:77084200-77107000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:77084400-77103600	Weak transcription	Fetal Kidney	kidney
26	chr11:77084600-77121200	Weak transcription	Thymus	Thymus
27	chr11:77085600-77092800	Weak transcription	HSMMtube	muscle
28	chr11:77086400-77093400	Weak transcription	Stomach Mucosa	stomach
29	chr11:77086400-77108000	Weak transcription	Brain Anterior Caudate	brain
30	chr11:77086600-77092800	Weak transcription	NHLF	lung
31	chr11:77086600-77102200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:77086600-77120000	Weak transcription	Spleen	Spleen
33	chr11:77087200-77106800	Weak transcription	NHEK	skin
34	chr11:77088200-77095800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:77088400-77092800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:77089400-77101200	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:77089800-77092800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:77090400-77093200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:77090600-77093200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:77090600-77094600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:77090800-77092800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:77090800-77092800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:77090800-77092800	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:77090800-77092800	Weak transcription	Osteobl	bone
45	chr11:77090800-77094400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:77090800-77094800	Weak transcription	Fetal Thymus	thymus
47	chr11:77090800-77096800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:77090800-77097000	Weak transcription	Ovary	ovary
49	chr11:77090800-77097200	Weak transcription	Brain Germinal Matrix	brain
50	chr11:77090800-77103000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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