Variant report

Variant	rs58110154
Chromosome Location	chr11:77073991-77073992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17135577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17135593	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17135612	1.00[AMR][1000 genomes]
rs58184314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126626	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:77034400-77086200	Weak transcription	NHLF	lung
4	chr11:77042800-77080800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:77043400-77074800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:77043400-77082400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:77043400-77083600	Weak transcription	Thymus	Thymus
8	chr11:77043800-77088400	Weak transcription	Colonic Mucosa	Colon
9	chr11:77044200-77075000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:77046200-77077000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:77046200-77092400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:77047200-77096000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:77047400-77089000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr11:77047400-77090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:77047800-77075000	Weak transcription	Left Ventricle	heart
17	chr11:77047800-77075600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:77048600-77087800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:77052600-77085600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:77055000-77085000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:77055200-77083400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:77055200-77092200	Weak transcription	Small Intestine	intestine
23	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea
24	chr11:77057400-77088000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:77058600-77075000	Weak transcription	NH-A	brain
26	chr11:77059800-77085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:77059800-77088800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:77060400-77084000	Weak transcription	Fetal Stomach	stomach
29	chr11:77063200-77081000	Weak transcription	Stomach Mucosa	stomach
30	chr11:77064200-77102800	Weak transcription	Brain Substantia Nigra	brain
31	chr11:77064600-77083000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:77064600-77085400	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:77064800-77076600	Weak transcription	Fetal Thymus	thymus
34	chr11:77064800-77085200	Weak transcription	Osteobl	bone
35	chr11:77066000-77084000	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:77066800-77090000	Weak transcription	Brain Angular Gyrus	brain
37	chr11:77067000-77076600	Weak transcription	Fetal Intestine Small	intestine
38	chr11:77067000-77085600	Weak transcription	A549	lung
39	chr11:77067000-77088000	Weak transcription	Gastric	stomach
40	chr11:77067000-77088200	Weak transcription	Liver	Liver
41	chr11:77067000-77092800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:77067000-77093800	Weak transcription	Psoas Muscle	Psoas
43	chr11:77067000-77097000	Weak transcription	Esophagus	oesophagus
44	chr11:77067200-77111800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:77067600-77083000	Weak transcription	Fetal Kidney	kidney
46	chr11:77068400-77083400	Weak transcription	Aorta	Aorta
47	chr11:77068600-77085600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:77068600-77085800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:77068800-77097000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:77069000-77083400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links