Variant report

Variant	rs17136613
Chromosome Location	chr5:113786415-113786416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11949478	1.00[AMR][1000 genomes]
rs17136662	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17136705	1.00[AMR][1000 genomes]
rs55942406	1.00[AMR][1000 genomes]
rs56284400	1.00[AMR][1000 genomes]
rs56789529	1.00[AMR][1000 genomes]
rs56976419	1.00[AMR][1000 genomes]
rs57220263	1.00[AMR][1000 genomes]
rs57876273	1.00[AMR][1000 genomes]
rs58946775	1.00[AMR][1000 genomes]
rs61514079	1.00[AMR][1000 genomes]
rs61530176	1.00[AMR][1000 genomes]
rs67647257	0.81[AFR][1000 genomes]
rs6864302	1.00[AMR][1000 genomes]
rs6897063	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs73247838	1.00[AMR][1000 genomes]
rs73247848	1.00[AMR][1000 genomes]
rs73247849	1.00[AMR][1000 genomes]
rs73779903	1.00[AMR][1000 genomes]
rs972756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17136613	CDH1	trans	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113782800-113786600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:113784000-113786600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:113784000-113787200	Enhancers	Fetal Heart	heart
4	chr5:113784000-113787200	Enhancers	Fetal Muscle Leg	muscle
5	chr5:113785800-113786600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:113785800-113786600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:113786000-113786600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr5:113786000-113786600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:113786200-113787200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:113786200-113793200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:113786400-113787400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:113786400-113788000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:113786400-113788200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:113786400-113791600	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:113786400-113793000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:113786400-113793000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:113786400-113793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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