Variant report

Variant	rs6897063
Chromosome Location	chr5:113827287-113827288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61989811..61992472-chr5:113826858..113829345,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11949478	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17136613	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17136662	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136666	0.84[YRI][hapmap]
rs17136705	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55942406	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56284400	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56789529	1.00[AMR][1000 genomes]
rs56976419	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57220263	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57876273	1.00[AMR][1000 genomes]
rs58946775	1.00[AMR][1000 genomes]
rs61514079	1.00[AMR][1000 genomes]
rs61530176	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864302	1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[AMR][1000 genomes]
rs73247838	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73247848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73247849	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs972756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv599433	chr5:113827287-113901090	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113813800-113843400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:113814000-113833600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113814800-113830600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:113821800-113827800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113822400-113831400	Weak transcription	Left Ventricle	heart
6	chr5:113822400-113831600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:113822400-113833600	Weak transcription	Right Ventricle	heart
8	chr5:113822800-113831400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:113823000-113833400	Strong transcription	Liver	Liver
10	chr5:113824200-113827400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:113824200-113828600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:113824200-113828800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:113825600-113834600	Weak transcription	Fetal Brain Female	brain
14	chr5:113826200-113833600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr5:113826600-113827400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:113827200-113830000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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