Variant report

Variant	rs17137641
Chromosome Location	chr5:114683867-114683868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13170069	0.90[CEU][hapmap]
rs13178035	0.82[CEU][hapmap]
rs13357967	0.89[CEU][hapmap]
rs35759988	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114679000-114685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:114679000-114685400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:114679000-114686000	Weak transcription	Pancreas	Pancrea
4	chr5:114680000-114684200	Weak transcription	A549	lung
5	chr5:114680000-114684800	Weak transcription	NHLF	lung
6	chr5:114680200-114684400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:114680200-114684400	Weak transcription	NH-A	brain
8	chr5:114680200-114684600	Weak transcription	Hela-S3	cervix
9	chr5:114680200-114684600	Weak transcription	Osteobl	bone
10	chr5:114680400-114684000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:114680400-114684400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:114680400-114684800	Weak transcription	NHDF-Ad	bronchial
13	chr5:114682400-114684400	Weak transcription	Fetal Intestine Large	intestine
14	chr5:114682800-114684000	Weak transcription	Fetal Intestine Small	intestine
15	chr5:114683600-114685600	Enhancers	Stomach Mucosa	stomach
16	chr5:114683600-114685800	Enhancers	Duodenum Mucosa	Duodenum
17	chr5:114683800-114685400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:114683800-114685600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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