Variant report

Variant	rs35759988
Chromosome Location	chr5:114689691-114689692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10060558	0.97[EUR][1000 genomes]
rs11949904	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11959552	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158926	0.82[ASN][1000 genomes]
rs13170069	0.97[EUR][1000 genomes]
rs13178035	0.82[ASN][1000 genomes]
rs13357967	0.96[EUR][1000 genomes]
rs1455845	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1455846	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17137641	0.82[AMR][1000 genomes]
rs17137669	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17137701	0.96[EUR][1000 genomes]
rs1824022	0.88[EUR][1000 genomes]
rs34040530	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34211223	0.84[EUR][1000 genomes]
rs35539972	0.82[EUR][1000 genomes]
rs57239247	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7701924	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114685400-114691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:114685600-114695800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:114686400-114690200	Weak transcription	Stomach Mucosa	stomach
4	chr5:114686800-114689800	Weak transcription	Aorta	Aorta
5	chr5:114688000-114690200	Weak transcription	A549	lung
6	chr5:114688000-114690400	Weak transcription	Hela-S3	cervix
7	chr5:114689600-114690400	Enhancers	Liver	Liver
8	chr5:114689600-114690400	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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