Variant report

Variant	rs1455845
Chromosome Location	chr5:114687642-114687643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10060558	0.96[EUR][1000 genomes]
rs11949904	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11959552	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13170069	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes]
rs13357967	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs1455846	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17137669	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17137701	0.94[EUR][1000 genomes]
rs1824022	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34040530	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34211223	0.82[EUR][1000 genomes]
rs35539972	0.81[EUR][1000 genomes]
rs35759988	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57239247	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7701924	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114684400-114688000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:114684600-114687800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:114684600-114688000	Enhancers	Hela-S3	cervix
4	chr5:114685400-114691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:114685600-114688200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:114685600-114695800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:114685800-114688000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:114685800-114689600	Weak transcription	Liver	Liver
9	chr5:114686200-114689600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:114686400-114690200	Weak transcription	Stomach Mucosa	stomach
11	chr5:114686600-114687800	Enhancers	K562	blood
12	chr5:114686800-114689800	Weak transcription	Aorta	Aorta
13	chr5:114687000-114688000	Enhancers	HUVEC	blood vessel
14	chr5:114687000-114688000	Enhancers	Osteobl	bone
15	chr5:114687200-114687800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:114687200-114687800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:114687200-114687800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:114687200-114687800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:114687200-114687800	Enhancers	Brain Anterior Caudate	brain
20	chr5:114687200-114687800	Enhancers	NHDF-Ad	bronchial
21	chr5:114687200-114687800	Enhancers	NHEK	skin
22	chr5:114687200-114687800	Enhancers	NHLF	lung
23	chr5:114687200-114688000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:114687400-114687800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:114687400-114687800	Flanking Active TSS	A549	lung
26	chr5:114687400-114687800	Enhancers	HMEC	breast
27	chr5:114687400-114687800	Enhancers	HSMM	muscle
28	chr5:114687400-114687800	Enhancers	HSMMtube	muscle
29	chr5:114687400-114688000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr5:114687400-114688000	Enhancers	NH-A	brain
31	chr5:114687600-114687800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:114687600-114688800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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