Variant report

Variant	rs11959552
Chromosome Location	chr5:114694442-114694443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10060558	0.81[EUR][1000 genomes]
rs11949904	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11953499	0.87[AFR][1000 genomes]
rs13158926	0.82[ASN][1000 genomes]
rs13170069	0.81[EUR][1000 genomes]
rs13178035	0.82[ASN][1000 genomes]
rs1455845	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1455846	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17137669	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1824022	0.96[EUR][1000 genomes]
rs34040530	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35759988	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57239247	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7701924	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114685600-114695800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:114690400-114695800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
4	chr5:114691200-114696000	Weak transcription	A549	lung
5	chr5:114691800-114695400	Weak transcription	Stomach Mucosa	stomach
6	chr5:114694000-114697000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:114694200-114694600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:114694400-114694800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:114694400-114696200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:114694400-114696600	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links