Variant report

Variant	rs17137925
Chromosome Location	chr5:114845181-114845182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11740361	0.95[ASN][1000 genomes]
rs12110084	1.00[YRI][hapmap]
rs12110088	1.00[YRI][hapmap]
rs17137960	1.00[YRI][hapmap]
rs17138022	1.00[YRI][hapmap]
rs17138041	1.00[YRI][hapmap]
rs17395548	1.00[CHB][hapmap]
rs17395582	1.00[CHB][hapmap]
rs17472256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17472710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17473484	1.00[CHB][hapmap]
rs17473792	1.00[CHB][hapmap]
rs3776801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3776802	0.95[ASN][1000 genomes]
rs73253029	0.83[ASN][1000 genomes]
rs73780315	1.00[ASN][1000 genomes]
rs7712026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114843200-114854800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:114843200-114858800	Weak transcription	Left Ventricle	heart
3	chr5:114843400-114845200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:114843600-114860000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:114844000-114847600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:114844000-114859000	Weak transcription	HSMMtube	muscle
7	chr5:114844200-114848000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:114844200-114849800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:114844200-114853200	Weak transcription	NHDF-Ad	bronchial
10	chr5:114844200-114854200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:114844200-114855000	Weak transcription	HSMM	muscle
12	chr5:114844200-114858000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:114844200-114858800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:114844200-114859800	Weak transcription	Osteobl	bone
15	chr5:114844800-114845400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:114844800-114846600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:114845000-114845600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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