Variant report

Variant	rs17137960
Chromosome Location	chr5:114873153-114873154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114871080..114874419-chr5:114878380..114881579,3	MCF-7	breast:
2	chr5:114871294..114875752-chr5:114877507..114881029,8	MCF-7	breast:
3	chr5:114872131..114874195-chr5:114874384..114876871,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145780	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12110084	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12110088	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17137912	1.00[AFR][1000 genomes]
rs17137925	1.00[YRI][hapmap]
rs17137932	1.00[AFR][1000 genomes]
rs17137963	1.00[AFR][1000 genomes]
rs17138022	1.00[YRI][hapmap]
rs17138041	1.00[YRI][hapmap]
rs58631560	1.00[AFR][1000 genomes]
rs59021008	1.00[AFR][1000 genomes]
rs61471519	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1796164	chr5:114854685-114936768	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114857800-114877200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:114858600-114878800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:114858800-114876200	Weak transcription	Fetal Stomach	stomach
4	chr5:114860800-114874000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:114860800-114877200	Weak transcription	Colonic Mucosa	Colon
6	chr5:114861000-114878600	Weak transcription	Pancreas	Pancrea
7	chr5:114861000-114878800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:114861000-114878800	Weak transcription	Spleen	Spleen
9	chr5:114861200-114874200	Weak transcription	Aorta	Aorta
10	chr5:114861200-114875800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:114861200-114878600	Weak transcription	Esophagus	oesophagus
12	chr5:114861400-114874200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:114861400-114874600	Weak transcription	Thymus	Thymus
14	chr5:114861400-114875400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:114861400-114877200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:114861600-114874200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:114863400-114874600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:114863600-114878600	Weak transcription	Gastric	stomach
19	chr5:114864200-114874200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:114864800-114874000	Weak transcription	Small Intestine	intestine
21	chr5:114867800-114874000	Weak transcription	Left Ventricle	heart
22	chr5:114867800-114875600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:114868400-114874000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:114868400-114878000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:114868600-114875000	Strong transcription	HSMM	muscle
26	chr5:114868800-114874200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:114869000-114875400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:114869200-114875600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:114869200-114876200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:114869800-114874800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:114870000-114875400	Strong transcription	K562	blood
32	chr5:114870000-114876200	Strong transcription	Fetal Thymus	thymus
33	chr5:114870000-114877400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr5:114870200-114875200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:114870400-114873200	Weak transcription	Fetal Intestine Small	intestine
36	chr5:114870400-114875800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
37	chr5:114870600-114873200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:114870600-114874600	Strong transcription	NHEK	skin
39	chr5:114870600-114875400	Strong transcription	A549	lung
40	chr5:114870600-114875600	Strong transcription	NH-A	brain
41	chr5:114870800-114873600	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr5:114871000-114876400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:114871200-114873200	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr5:114871200-114873200	Strong transcription	Fetal Kidney	kidney
45	chr5:114871200-114873400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:114871200-114873600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr5:114871200-114874400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:114871200-114875400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr5:114871200-114875800	Genic enhancers	Primary T cells from cord blood	blood
50	chr5:114871200-114879200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin

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