Variant report

Variant	rs1713873
Chromosome Location	chr18:14921344-14921345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58958906	1.00[AMR][1000 genomes]
rs59026119	0.92[AFR][1000 genomes]
rs61516442	1.00[AMR][1000 genomes]
rs67282980	1.00[AMR][1000 genomes]
rs73427586	1.00[AMR][1000 genomes]
rs73427593	1.00[AMR][1000 genomes]
rs73427594	1.00[AMR][1000 genomes]
rs73429604	1.00[AMR][1000 genomes]
rs73431625	1.00[AMR][1000 genomes]
rs73431631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431639	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431640	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8090111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9748509	1.00[AMR][1000 genomes]
rs9748513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv960218	chr18:14897850-14928912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv576542	chr18:14913292-14978677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760487	chr18:14916966-14927873	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14916400-14925200	Weak transcription	Spleen	Spleen
2	chr18:14918200-14928400	Weak transcription	Aorta	Aorta
3	chr18:14919400-14922200	Enhancers	Liver	Liver
4	chr18:14920000-14922200	Enhancers	Duodenum Mucosa	Duodenum
5	chr18:14920200-14933200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:14921000-14921400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr18:14921000-14921600	Weak transcription	Fetal Intestine Large	intestine
8	chr18:14921200-14921400	Enhancers	Pancreas	Pancrea
9	chr18:14921200-14921600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr18:14921200-14922000	Enhancers	Colonic Mucosa	Colon
11	chr18:14921200-14923200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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