Variant report

Variant	rs61516442
Chromosome Location	chr18:14827750-14827751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1713873	1.00[AMR][1000 genomes]
rs4113249	0.88[AFR][1000 genomes]
rs58958906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67282980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427586	1.00[AMR][1000 genomes]
rs73427593	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427594	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73429604	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431625	1.00[AMR][1000 genomes]
rs73431631	1.00[AMR][1000 genomes]
rs73431639	1.00[AMR][1000 genomes]
rs73431640	1.00[AMR][1000 genomes]
rs73431642	1.00[AMR][1000 genomes]
rs8090111	1.00[AMR][1000 genomes]
rs8092625	1.00[AMR][1000 genomes]
rs9748509	1.00[AMR][1000 genomes]
rs9748513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv2216	chr18:14776359-14841989	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	esv1814681	chr18:14783028-14827894	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv962499	chr18:14822501-14830614	Enhancers Weak transcription	TF binding region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14826400-14828600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr18:14827000-14827800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:14827000-14828200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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