Variant report

Variant	rs17139524
Chromosome Location	chr5:115684831-115684832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115647669..115649812-chr5:115683571..115685304,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10073557	0.90[JPT][hapmap]
rs10519452	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11948029	0.81[JPT][hapmap]
rs1422498	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs17139210	0.90[JPT][hapmap]
rs17139251	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs17139353	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs17139532	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1896684	0.90[JPT][hapmap]
rs4308513	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs55663230	0.93[ASN][1000 genomes]
rs55742067	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55857351	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56317742	0.93[ASN][1000 genomes]
rs56370685	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57209700	0.94[ASN][1000 genomes]
rs57526524	0.90[AMR][1000 genomes]
rs58291729	0.90[AMR][1000 genomes]
rs6594958	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6594959	0.90[JPT][hapmap]
rs6885461	0.90[JPT][hapmap]
rs72808934	0.82[EUR][1000 genomes]
rs72808943	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72808945	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72808949	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72808952	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72808958	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808959	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808960	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808961	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808964	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72808969	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808973	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808977	0.87[ASN][1000 genomes]
rs72808978	0.90[ASN][1000 genomes]
rs72808985	0.90[AMR][1000 genomes]
rs72808987	0.90[AMR][1000 genomes]
rs72808989	0.90[AMR][1000 genomes]
rs72808992	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv869754	chr5:115634234-115696094	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv4968	chr5:115635771-115714856	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115649000-115692800	Weak transcription	Fetal Heart	heart
2	chr5:115679000-115686800	Weak transcription	Primary T cells from cord blood	blood
3	chr5:115679800-115686800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:115679800-115686800	Weak transcription	Left Ventricle	heart
5	chr5:115680000-115693200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:115680600-115695800	Weak transcription	Ovary	ovary
7	chr5:115683200-115689000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:115683400-115685200	ZNF genes & repeats	Primary B cells from cord blood	blood
9	chr5:115683400-115685200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:115684000-115685200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr5:115684200-115685200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:115684400-115685000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:115684400-115685200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr5:115684400-115694400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:115684400-115705800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr5:115684600-115685200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr5:115684600-115686800	Weak transcription	Aorta	Aorta
18	chr5:115684600-115687600	Weak transcription	Pancreas	Pancrea
19	chr5:115684600-115690200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:115684800-115688600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr5:115684800-115697800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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