Variant report

Variant	rs72808961
Chromosome Location	chr5:115673658-115673659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10519452	0.90[EUR][1000 genomes]
rs17139251	0.90[EUR][1000 genomes]
rs17139524	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17139532	0.94[ASN][1000 genomes]
rs55663230	0.94[ASN][1000 genomes]
rs55742067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55857351	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56317742	0.94[ASN][1000 genomes]
rs56370685	0.94[ASN][1000 genomes]
rs57209700	0.95[ASN][1000 genomes]
rs57659470	0.92[EUR][1000 genomes]
rs66783056	0.90[EUR][1000 genomes]
rs67139169	0.92[EUR][1000 genomes]
rs67339497	0.86[EUR][1000 genomes]
rs67412230	0.95[EUR][1000 genomes]
rs72804882	0.87[EUR][1000 genomes]
rs72804884	0.87[EUR][1000 genomes]
rs72804885	0.87[EUR][1000 genomes]
rs72804889	0.90[EUR][1000 genomes]
rs72804891	0.87[EUR][1000 genomes]
rs72804893	0.87[EUR][1000 genomes]
rs72804896	0.90[EUR][1000 genomes]
rs72804899	0.90[EUR][1000 genomes]
rs72804900	0.87[EUR][1000 genomes]
rs72806907	0.84[EUR][1000 genomes]
rs72806908	0.90[EUR][1000 genomes]
rs72806910	0.87[EUR][1000 genomes]
rs72806917	0.90[EUR][1000 genomes]
rs72806919	0.90[EUR][1000 genomes]
rs72806920	0.90[EUR][1000 genomes]
rs72806923	0.90[EUR][1000 genomes]
rs72806926	0.90[EUR][1000 genomes]
rs72806927	0.90[EUR][1000 genomes]
rs72806930	0.95[EUR][1000 genomes]
rs72806931	0.95[EUR][1000 genomes]
rs72806933	0.95[EUR][1000 genomes]
rs72806937	0.95[EUR][1000 genomes]
rs72806941	0.95[EUR][1000 genomes]
rs72806944	0.95[EUR][1000 genomes]
rs72808904	0.95[EUR][1000 genomes]
rs72808909	0.95[EUR][1000 genomes]
rs72808912	0.95[EUR][1000 genomes]
rs72808917	0.95[EUR][1000 genomes]
rs72808922	0.95[EUR][1000 genomes]
rs72808927	0.95[EUR][1000 genomes]
rs72808928	0.95[EUR][1000 genomes]
rs72808929	0.95[EUR][1000 genomes]
rs72808930	0.95[EUR][1000 genomes]
rs72808931	0.95[EUR][1000 genomes]
rs72808932	0.95[EUR][1000 genomes]
rs72808934	1.00[EUR][1000 genomes]
rs72808943	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72808945	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72808949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72808952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808958	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808959	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72808964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72808969	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808973	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808977	0.88[ASN][1000 genomes]
rs72808978	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv869754	chr5:115634234-115696094	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv4968	chr5:115635771-115714856	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115649000-115692800	Weak transcription	Fetal Heart	heart
2	chr5:115666800-115683600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:115670800-115679600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:115670800-115679600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:115672200-115683400	Weak transcription	Primary B cells from cord blood	blood

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