Variant report

Variant	rs72808932
Chromosome Location	chr5:115632567-115632568
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115632385..115634405-chr5:115635053..115637473,2	K562	blood:
2	chr5:115630950..115633524-chr5:115633964..115636710,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LVRN.1-4	chr5:115632111-115632653	NONHSAT103359

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10519452	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17139251	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17139353	0.91[ASN][1000 genomes]
rs2900096	0.87[ASN][1000 genomes]
rs4308513	0.91[ASN][1000 genomes]
rs55742067	0.92[EUR][1000 genomes]
rs56168251	1.00[AFR][1000 genomes]
rs57526524	1.00[AFR][1000 genomes]
rs57659470	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58291729	1.00[AFR][1000 genomes]
rs58424191	0.97[ASN][1000 genomes]
rs58776100	1.00[AFR][1000 genomes]
rs66783056	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67139169	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67339497	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67412230	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72804862	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804864	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804867	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804869	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804873	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804875	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804882	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804884	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804885	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804889	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72804891	0.82[EUR][1000 genomes]
rs72804893	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72804896	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72804899	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72804900	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72806907	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72806908	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806910	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72806917	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806919	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806920	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806923	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806926	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806927	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806930	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806931	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806933	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806937	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806941	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72806944	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72808904	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808909	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808912	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72808916	0.91[ASN][1000 genomes]
rs72808917	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808922	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808927	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72808928	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72808929	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808930	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72808931	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72808934	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808943	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72808945	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808949	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72808952	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808958	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72808959	0.92[EUR][1000 genomes]
rs72808960	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72808961	0.95[EUR][1000 genomes]
rs72808964	0.95[EUR][1000 genomes]
rs72808976	1.00[AFR][1000 genomes]
rs72808979	1.00[AFR][1000 genomes]
rs72808985	1.00[AFR][1000 genomes]
rs72808987	1.00[AFR][1000 genomes]
rs72808992	1.00[AFR][1000 genomes]
rs7715621	0.89[ASN][1000 genomes]
rs7729344	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882743	chr5:115501792-115634127	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882747	chr5:115566636-115662510	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2755740	chr5:115576139-115633474	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv2757134	chr5:115578810-115633474	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2759372	chr5:115578810-115633474	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv882748	chr5:115584159-115669950	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2752575	chr5:115596277-115633474	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115612800-115633200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:115612800-115633200	Weak transcription	Ovary	ovary
3	chr5:115613400-115641600	Weak transcription	HSMM	muscle
4	chr5:115613600-115633000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:115624400-115633200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:115624400-115633600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:115625600-115633200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:115625600-115633200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:115625600-115633200	Weak transcription	Psoas Muscle	Psoas
10	chr5:115625600-115633600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:115625600-115633800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:115625600-115634000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:115625600-115639200	Weak transcription	Fetal Stomach	stomach
14	chr5:115625600-115643000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:115626000-115633200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:115626000-115633200	Weak transcription	Left Ventricle	heart
17	chr5:115626400-115633400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:115626400-115633800	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:115626600-115633600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:115626600-115641600	Weak transcription	Fetal Brain Male	brain
21	chr5:115626800-115642200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:115627000-115633400	Weak transcription	Fetal Lung	lung
23	chr5:115627000-115633800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:115627200-115635200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:115627400-115633600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:115627800-115633200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:115627800-115639200	Weak transcription	Placenta	Placenta
28	chr5:115628000-115643800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:115628400-115633400	Weak transcription	Fetal Kidney	kidney
30	chr5:115628400-115639200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:115628400-115641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:115628600-115633000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr5:115628600-115633200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr5:115628600-115633200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr5:115628600-115633400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:115628600-115639400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:115628600-115643400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:115628800-115632600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr5:115628800-115633600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:115629000-115633200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:115629000-115643800	Weak transcription	HUVEC	blood vessel
42	chr5:115629400-115638200	Weak transcription	Pancreas	Pancrea
43	chr5:115629400-115638400	Weak transcription	Right Ventricle	heart
44	chr5:115629600-115633000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:115629800-115633200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:115630000-115633600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr5:115630600-115633400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:115630800-115633600	Weak transcription	Esophagus	oesophagus
49	chr5:115630800-115633600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr5:115630800-115634000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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