Variant report

Variant rs17139876
Chromosome Location chr5:115812713-115812714
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115783600-115813000 Weak transcription Spleen Spleen
2 chr5:115783600-115813200 Weak transcription Gastric stomach
3 chr5:115783600-115829600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr5:115788000-115813200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr5:115791600-115838000 Weak transcription Right Ventricle heart
6 chr5:115796000-115833400 Strong transcription HUES64 Cell Line embryonic stem cell
7 chr5:115797000-115834800 Strong transcription H1 Cell Line embryonic stem cell
8 chr5:115797000-115838400 Strong transcription Placenta Placenta
9 chr5:115797400-115833800 Strong transcription iPS-18 Cell Line embryonic stem cell
10 chr5:115797600-115834600 Strong transcription H9 Cell Line embryonic stem cell
11 chr5:115797800-115834800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr5:115798000-115833200 Strong transcription HUES48 Cell Line embryonic stem cell
13 chr5:115798000-115834600 Strong transcription iPS-20b Cell Line embryonic stem cell
14 chr5:115799000-115830400 Strong transcription HUES6 Cell Line embryonic stem cell
15 chr5:115799400-115832000 Strong transcription Fetal Muscle Trunk muscle
16 chr5:115800200-115812800 Strong transcription ES-I3 Cell Line embryonic stem cell
17 chr5:115800800-115813200 Strong transcription Fetal Adrenal Gland Adrenal Gland
18 chr5:115801400-115824000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr5:115801400-115825000 Weak transcription Psoas Muscle Psoas
20 chr5:115803000-115815400 Weak transcription Thymus Thymus
21 chr5:115803400-115813200 Weak transcription Fetal Thymus thymus
22 chr5:115803400-115816000 Strong transcription Cortex derived primary cultured neurospheres brain
23 chr5:115803400-115833200 Strong transcription iPS-15b Cell Line embryonic stem cell
24 chr5:115803600-115813000 Weak transcription Esophagus oesophagus
25 chr5:115804600-115822600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr5:115804800-115813000 Weak transcription Primary T cells from cord blood blood
27 chr5:115808800-115818200 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr5:115809800-115812800 Weak transcription Fetal Stomach stomach
29 chr5:115809800-115812800 Weak transcription Lung lung
30 chr5:115809800-115813000 Weak transcription Pancreas Pancrea
31 chr5:115809800-115813200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr5:115810200-115812800 Strong transcription Rectal Mucosa Donor 31 rectum
33 chr5:115810800-115814200 Strong transcription ES-WA7 Cell Line embryonic stem cell
34 chr5:115810800-115821200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr5:115811000-115813200 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
36 chr5:115811000-115814200 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
37 chr5:115811000-115814800 Strong transcription Colon Smooth Muscle Colon
38 chr5:115811000-115815600 Strong transcription Left Ventricle heart
39 chr5:115811400-115813800 Strong transcription Brain Cingulate Gyrus brain
40 chr5:115811800-115813000 Strong transcription Fetal Lung lung
41 chr5:115811800-115813600 ZNF genes & repeats Primary hematopoietic stem cells blood
42 chr5:115811800-115814000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
43 chr5:115811800-115814600 Strong transcription Rectal Smooth Muscle rectum
44 chr5:115811800-115818200 Strong transcription Fetal Brain Female brain
45 chr5:115812000-115813000 ZNF genes & repeats Fetal Heart heart
46 chr5:115812000-115813600 ZNF genes & repeats Fetal Muscle Leg muscle
47 chr5:115812000-115816000 Strong transcription Brain Anterior Caudate brain
48 chr5:115812200-115813200 ZNF genes & repeats Primary B cells from cord blood blood
49 chr5:115812200-115813200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
50 chr5:115812200-115813800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --

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