Variant report

Variant rs17432496
Chromosome Location chr5:115811273-115811274
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115783600-115813000 Weak transcription Spleen Spleen
2 chr5:115783600-115813200 Weak transcription Gastric stomach
3 chr5:115783600-115829600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr5:115788000-115813200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr5:115789600-115812600 Strong transcription Fetal Intestine Large intestine
6 chr5:115790400-115812400 Weak transcription HepG2 liver
7 chr5:115791000-115812400 Weak transcription Fetal Brain Male brain
8 chr5:115791000-115812600 Weak transcription Ovary ovary
9 chr5:115791600-115838000 Weak transcription Right Ventricle heart
10 chr5:115792800-115812600 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr5:115796000-115833400 Strong transcription HUES64 Cell Line embryonic stem cell
12 chr5:115797000-115834800 Strong transcription H1 Cell Line embryonic stem cell
13 chr5:115797000-115838400 Strong transcription Placenta Placenta
14 chr5:115797400-115833800 Strong transcription iPS-18 Cell Line embryonic stem cell
15 chr5:115797600-115834600 Strong transcription H9 Cell Line embryonic stem cell
16 chr5:115797800-115834800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr5:115798000-115833200 Strong transcription HUES48 Cell Line embryonic stem cell
18 chr5:115798000-115834600 Strong transcription iPS-20b Cell Line embryonic stem cell
19 chr5:115799000-115830400 Strong transcription HUES6 Cell Line embryonic stem cell
20 chr5:115799400-115812200 Strong transcription Rectal Mucosa Donor 29 rectum
21 chr5:115799400-115832000 Strong transcription Fetal Muscle Trunk muscle
22 chr5:115800200-115812800 Strong transcription ES-I3 Cell Line embryonic stem cell
23 chr5:115800600-115812000 Weak transcription Fetal Heart heart
24 chr5:115800800-115813200 Strong transcription Fetal Adrenal Gland Adrenal Gland
25 chr5:115801000-115812600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr5:115801400-115824000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr5:115801400-115825000 Weak transcription Psoas Muscle Psoas
28 chr5:115803000-115815400 Weak transcription Thymus Thymus
29 chr5:115803400-115812400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr5:115803400-115812600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr5:115803400-115813200 Weak transcription Fetal Thymus thymus
32 chr5:115803400-115816000 Strong transcription Cortex derived primary cultured neurospheres brain
33 chr5:115803400-115833200 Strong transcription iPS-15b Cell Line embryonic stem cell
34 chr5:115803600-115813000 Weak transcription Esophagus oesophagus
35 chr5:115804000-115812200 Weak transcription Fetal Intestine Small intestine
36 chr5:115804000-115812600 Weak transcription Colonic Mucosa Colon
37 chr5:115804200-115812000 Weak transcription Brain Anterior Caudate brain
38 chr5:115804400-115811800 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr5:115804400-115811800 Weak transcription Rectal Smooth Muscle rectum
40 chr5:115804400-115812600 Weak transcription Brain Angular Gyrus brain
41 chr5:115804400-115812600 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr5:115804600-115812200 Weak transcription Liver Liver
43 chr5:115804600-115812400 Weak transcription Brain Germinal Matrix brain
44 chr5:115804600-115822600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr5:115804800-115813000 Weak transcription Primary T cells from cord blood blood
46 chr5:115805000-115812200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr5:115805000-115812200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr5:115805000-115812400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr5:115805200-115812600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr5:115805600-115811800 Weak transcription Primary hematopoietic stem cells blood

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