Variant report

Variant	rs17509902
Chromosome Location	chr5:115778740-115778741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr5:115778678-115778773	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:115778729-115779892	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000248445	TF binding region

rs_ID	r²[population]
rs17139826	0.84[EUR][1000 genomes]
rs17432496	0.85[CEU][hapmap]
rs73270748	0.86[EUR][1000 genomes]
rs73781088	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
3	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:115757200-115782000	Weak transcription	Gastric	stomach
7	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
9	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
10	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
12	chr5:115772200-115779000	Enhancers	Brain Angular Gyrus	brain
13	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
14	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
15	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
16	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
18	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
19	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:115773800-115779600	Weak transcription	Fetal Kidney	kidney
21	chr5:115774000-115779000	Enhancers	Fetal Muscle Leg	muscle
22	chr5:115774000-115780400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr5:115774400-115779000	Enhancers	Fetal Heart	heart
24	chr5:115774400-115779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:115774600-115780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:115774600-115780200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
28	chr5:115775200-115779200	Enhancers	Right Atrium	heart
29	chr5:115775200-115781800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr5:115775800-115781400	Enhancers	Fetal Brain Female	brain
31	chr5:115776000-115779200	Enhancers	Fetal Brain Male	brain
32	chr5:115776200-115779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:115776400-115779200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr5:115776600-115784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr5:115776800-115780600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:115777000-115779000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr5:115777200-115779800	Enhancers	H9 Cell Line	embryonic stem cell
39	chr5:115777200-115782000	Weak transcription	HepG2	liver
40	chr5:115777400-115779400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:115777400-115780600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr5:115777400-115781000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:115777400-115782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:115777800-115779600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr5:115778000-115779000	Weak transcription	Placenta	Placenta
46	chr5:115778000-115780400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:115778000-115782600	Weak transcription	Fetal Thymus	thymus
48	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr5:115778200-115779000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr5:115778200-115779000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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