The 2.0 version of rSNPBase

Variant report

Variant rs17139826
Chromosome Location chr5:115788835-115788836
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115774600-115811000 Weak transcription Small Intestine intestine
2 chr5:115778000-115790000 Weak transcription Primary T helper cells fromperipheralblood blood
3 chr5:115779000-115789800 Strong transcription Placenta Placenta
4 chr5:115780600-115789400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr5:115781400-115789600 Weak transcription Primary B cells from cord blood blood
6 chr5:115782000-115789600 Weak transcription Fetal Brain Male brain
7 chr5:115782200-115798200 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr5:115782600-115789800 Weak transcription Monocytes-CD14+_RO01746 blood
9 chr5:115782800-115789200 Weak transcription Primary B cells from peripheral blood blood
10 chr5:115783000-115789800 Weak transcription Fetal Thymus thymus
11 chr5:115783400-115789800 Weak transcription Thymus Thymus
12 chr5:115783400-115790200 Weak transcription Brain Germinal Matrix brain
13 chr5:115783400-115790200 Weak transcription Right Ventricle heart
14 chr5:115783600-115789200 Weak transcription Colon Smooth Muscle Colon
15 chr5:115783600-115789600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr5:115783600-115789600 Weak transcription Rectal Smooth Muscle rectum
17 chr5:115783600-115789800 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr5:115783600-115789800 Weak transcription Fetal Lung lung
19 chr5:115783600-115790000 Weak transcription Aorta Aorta
20 chr5:115783600-115790000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr5:115783600-115790200 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr5:115783600-115790400 Enhancers HepG2 liver
23 chr5:115783600-115802200 Weak transcription Colonic Mucosa Colon
24 chr5:115783600-115802200 Weak transcription Pancreas Pancrea
25 chr5:115783600-115803400 Weak transcription Esophagus oesophagus
26 chr5:115783600-115813000 Weak transcription Spleen Spleen
27 chr5:115783600-115813200 Weak transcription Gastric stomach
28 chr5:115783600-115829600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr5:115783800-115789600 Weak transcription Stomach Smooth Muscle stomach
30 chr5:115783800-115789800 Weak transcription Adipose Nuclei Adipose
31 chr5:115783800-115789800 Weak transcription Ovary ovary
32 chr5:115783800-115790000 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr5:115783800-115803200 Weak transcription Liver Liver
34 chr5:115784000-115791200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr5:115784200-115796800 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr5:115784200-115800000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr5:115784400-115789000 Genic enhancers iPS-20b Cell Line embryonic stem cell
38 chr5:115784400-115791000 Genic enhancers HUES6 Cell Line embryonic stem cell
39 chr5:115784600-115789400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr5:115785000-115790000 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr5:115785200-115789000 Weak transcription Fetal Brain Female brain
42 chr5:115785200-115789800 Weak transcription Primary T cells from cord blood blood
43 chr5:115785200-115800200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr5:115785400-115789600 Weak transcription Left Ventricle heart
45 chr5:115786400-115789000 Strong transcription Fetal Adrenal Gland Adrenal Gland
46 chr5:115786400-115789200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr5:115786400-115789600 Strong transcription Fetal Muscle Leg muscle
48 chr5:115787000-115789000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
49 chr5:115787000-115789600 Weak transcription Primary hematopoietic stem cells blood
50 chr5:115787000-115789600 Weak transcription Primary hematopoietic stem cells short term culture blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015