Variant report

Variant	rs17139919
Chromosome Location	chr5:115824639-115824640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519470	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12514156	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12515001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12516652	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12518256	0.85[ASN][1000 genomes]
rs12520026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12522487	1.00[AFR][1000 genomes]
rs17139852	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17139886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17139910	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2287687	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3733724	0.82[MEX][hapmap]
rs3931031	1.00[AFR][1000 genomes]
rs56170797	1.00[ASN][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
3	chr5:115796000-115833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:115797000-115834800	Strong transcription	H1 Cell Line	embryonic stem cell
5	chr5:115797000-115838400	Strong transcription	Placenta	Placenta
6	chr5:115797400-115833800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:115797600-115834600	Strong transcription	H9 Cell Line	embryonic stem cell
8	chr5:115797800-115834800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:115798000-115833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:115798000-115834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:115799000-115830400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:115799400-115832000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr5:115801400-115825000	Weak transcription	Psoas Muscle	Psoas
14	chr5:115803400-115833200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:115813200-115826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:115813600-115826800	Strong transcription	Fetal Muscle Leg	muscle
17	chr5:115813600-115831800	Strong transcription	Fetal Stomach	stomach
18	chr5:115813600-115832000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:115813800-115827200	Weak transcription	Primary T cells from cord blood	blood
20	chr5:115813800-115830600	Weak transcription	HepG2	liver
21	chr5:115813800-115833600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:115813800-115851000	Weak transcription	Liver	Liver
23	chr5:115814000-115826800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:115814000-115830200	Weak transcription	Esophagus	oesophagus
25	chr5:115814000-115850200	Weak transcription	Small Intestine	intestine
26	chr5:115814800-115827800	Weak transcription	Fetal Heart	heart
27	chr5:115816000-115830400	Weak transcription	Lung	lung
28	chr5:115816000-115838400	Weak transcription	Spleen	Spleen
29	chr5:115816200-115827000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:115816400-115830000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:115816400-115830400	Weak transcription	Primary B cells from cord blood	blood
32	chr5:115816800-115827200	Weak transcription	Brain Angular Gyrus	brain
33	chr5:115816800-115840000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:115817000-115826600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:115817600-115828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:115817600-115829600	Weak transcription	Pancreas	Pancrea
37	chr5:115818200-115826000	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:115818200-115827400	Weak transcription	Brain Anterior Caudate	brain
39	chr5:115818400-115827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:115818400-115827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:115818600-115830000	Weak transcription	Colonic Mucosa	Colon
42	chr5:115818600-115833200	Weak transcription	Fetal Brain Male	brain
43	chr5:115820000-115825200	Strong transcription	Fetal Lung	lung
44	chr5:115820000-115827200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr5:115820000-115830200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:115820000-115832600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr5:115821400-115828600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:115821400-115833400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr5:115821600-115828800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr5:115822400-115825400	Strong transcription	Left Ventricle	heart

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