Variant report

Variant	rs17139922
Chromosome Location	chr7:117112090-117112091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10281281	0.82[MKK][hapmap];0.83[YRI][hapmap]
rs17139920	0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17347210	0.86[AMR][1000 genomes]
rs73717524	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117110400-117113200	Enhancers	Dnd41	blood
2	chr7:117110600-117113400	Enhancers	Fetal Heart	heart
3	chr7:117111200-117112600	Weak transcription	Brain Substantia Nigra	brain
4	chr7:117111200-117112600	Enhancers	GM12878-XiMat	blood
5	chr7:117111200-117113600	Weak transcription	Pancreas	Pancrea
6	chr7:117112000-117112200	Enhancers	Small Intestine	intestine
7	chr7:117112000-117113000	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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