Variant report
| Variant | rs17139920 |
|---|---|
| Chromosome Location | chr7:117110081-117110082 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:117100350-117112126..7:117341506-117356953 | GM12878 | blood: | |
| 2 | 7:117100350-117112126..7:117326534-117332210 | H1-hESC | embryonic stem cell: | embryo |
| 3 | 7:116580605-116585719..7:117100350-117112126 | H1-hESC | embryonic stem cell: | embryo |
| 4 | chr7:117107707..117110294-chr7:117111075..117113526,2 | MCF-7 | breast: | |
| 5 | chr7:117108067..117110269-chr7:117111131..117113767,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222150 | Chromatin interaction |
| ENSG00000001626 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10487371 | 0.80[YRI][hapmap] |
| rs17139922 | 0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs17347210 | 0.80[YRI][hapmap];0.93[AMR][1000 genomes] |
| rs4571678 | 0.87[YRI][hapmap] |
| rs73717524 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs989727 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889076 | chr7:117064625-117147547 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
